Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
XRCC1P18887 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.86■■□□□ 1.09
XRCC1P18887 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
XRCC1P18887 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.86■■□□□ 1.09
XRCC1P18887 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.86■■□□□ 1.09
XRCC1P18887 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.86■■□□□ 1.09
XRCC1P18887 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.86■■□□□ 1.09
XRCC1P18887 AC142381.2-201ENST00000566120 298 ntBASIC21.86■■□□□ 1.09
XRCC1P18887 MIR3181-201ENST00000578512 73 ntBASIC21.86■■□□□ 1.09
XRCC1P18887 MIR4767-201ENST00000582827 78 ntBASIC21.86■■□□□ 1.09
XRCC1P18887 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
XRCC1P18887 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
XRCC1P18887 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.86■■□□□ 1.09
XRCC1P18887 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.86■■□□□ 1.09
XRCC1P18887 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.86■■□□□ 1.09
XRCC1P18887 FP325331.1-202ENST00000623531 1380 ntBASIC21.86■■□□□ 1.09
XRCC1P18887 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC1P18887 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC1P18887 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC1P18887 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC1P18887 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC1P18887 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.85■■□□□ 1.09
XRCC1P18887 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.85■■□□□ 1.09
XRCC1P18887 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC1P18887 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
XRCC1P18887 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC1P18887 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC1P18887 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC1P18887 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC1P18887 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC1P18887 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC1P18887 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC1P18887 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC1P18887 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC1P18887 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC1P18887 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.84■■□□□ 1.09
XRCC1P18887 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.84■■□□□ 1.09
XRCC1P18887 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.84■■□□□ 1.09
XRCC1P18887 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.84■■□□□ 1.09
XRCC1P18887 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
XRCC1P18887 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.84■■□□□ 1.09
XRCC1P18887 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC1P18887 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC1P18887 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
XRCC1P18887 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.84■■□□□ 1.09
XRCC1P18887 AC092068.2-201ENST00000590491 1708 ntBASIC21.83■■□□□ 1.09
XRCC1P18887 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
XRCC1P18887 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.83■■□□□ 1.09
XRCC1P18887 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
XRCC1P18887 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
XRCC1P18887 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.83■■□□□ 1.09
XRCC1P18887 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.83■■□□□ 1.09
XRCC1P18887 AC136469.2-201ENST00000623944 1028 ntBASIC21.83■■□□□ 1.09
XRCC1P18887 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.83■■□□□ 1.09
XRCC1P18887 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
XRCC1P18887 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
XRCC1P18887 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
XRCC1P18887 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
XRCC1P18887 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
XRCC1P18887 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
XRCC1P18887 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
XRCC1P18887 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
XRCC1P18887 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
XRCC1P18887 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
XRCC1P18887 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
XRCC1P18887 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
XRCC1P18887 AL136967.2-201ENST00000623968 743 ntBASIC21.82■■□□□ 1.08
XRCC1P18887 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
XRCC1P18887 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
XRCC1P18887 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
XRCC1P18887 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
XRCC1P18887 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
XRCC1P18887 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
XRCC1P18887 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
XRCC1P18887 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
XRCC1P18887 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
XRCC1P18887 pRNA.6-201ENST00000610482 90 ntBASIC21.81■■□□□ 1.08
XRCC1P18887 pRNA.5-201ENST00000612139 90 ntBASIC21.81■■□□□ 1.08
XRCC1P18887 pRNA.11-201ENST00000618423 90 ntBASIC21.81■■□□□ 1.08
XRCC1P18887 pRNA.13-201ENST00000619112 90 ntBASIC21.81■■□□□ 1.08
XRCC1P18887 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.81■■□□□ 1.08
XRCC1P18887 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
XRCC1P18887 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
XRCC1P18887 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
XRCC1P18887 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.81■■□□□ 1.08
XRCC1P18887 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
XRCC1P18887 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.81■■□□□ 1.08
XRCC1P18887 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
XRCC1P18887 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
XRCC1P18887 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 MIR939-201ENST00000401314 82 ntBASIC21.8■■□□□ 1.08
XRCC1P18887 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC1P18887 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms