Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
COL2A1P02458 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
COL2A1P02458 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC26.05■■□□□ 1.76
COL2A1P02458 SMUG1P1-201ENST00000590640 811 ntBASIC26.05■■□□□ 1.76
COL2A1P02458 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC26.05■■□□□ 1.76
COL2A1P02458 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC26.05■■□□□ 1.76
COL2A1P02458 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC26.05■■□□□ 1.76
COL2A1P02458 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC26.05■■□□□ 1.76
COL2A1P02458 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
COL2A1P02458 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL2A1P02458 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL2A1P02458 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC26.04■■□□□ 1.76
COL2A1P02458 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC26.04■■□□□ 1.76
COL2A1P02458 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL2A1P02458 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL2A1P02458 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC26.04■■□□□ 1.76
COL2A1P02458 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL2A1P02458 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL2A1P02458 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC26.04■■□□□ 1.76
COL2A1P02458 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
COL2A1P02458 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC26.03■■□□□ 1.76
COL2A1P02458 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
COL2A1P02458 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC26.03■■□□□ 1.76
COL2A1P02458 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
COL2A1P02458 BX005040.4-201ENST00000637145 1518 ntBASIC26.02■■□□□ 1.76
COL2A1P02458 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
COL2A1P02458 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
COL2A1P02458 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC26.02■■□□□ 1.76
COL2A1P02458 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL2A1P02458 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC26.02■■□□□ 1.76
COL2A1P02458 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC26.02■■□□□ 1.76
COL2A1P02458 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
COL2A1P02458 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC26.02■■□□□ 1.76
COL2A1P02458 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.76
COL2A1P02458 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.76
COL2A1P02458 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
COL2A1P02458 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.01■■□□□ 1.75
COL2A1P02458 DLX3-202ENST00000512495 834 ntTSL 2 BASIC26.01■■□□□ 1.75
COL2A1P02458 VPS53-216ENST00000574029 585 ntTSL 4 BASIC26.01■■□□□ 1.75
COL2A1P02458 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL2A1P02458 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
COL2A1P02458 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC26■■□□□ 1.75
COL2A1P02458 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
COL2A1P02458 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC26■■□□□ 1.75
COL2A1P02458 GXYLT1P2-201ENST00000433312 1230 ntBASIC26■■□□□ 1.75
COL2A1P02458 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC26■■□□□ 1.75
COL2A1P02458 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
COL2A1P02458 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC26■■□□□ 1.75
COL2A1P02458 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC26■■□□□ 1.75
COL2A1P02458 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
COL2A1P02458 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
COL2A1P02458 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL2A1P02458 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL2A1P02458 AC006015.1-201ENST00000429970 570 ntBASIC25.99■■□□□ 1.75
COL2A1P02458 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC25.99■■□□□ 1.75
COL2A1P02458 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC25.99■■□□□ 1.75
COL2A1P02458 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC25.99■■□□□ 1.75
COL2A1P02458 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL2A1P02458 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
COL2A1P02458 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
COL2A1P02458 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
COL2A1P02458 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
COL2A1P02458 AC004911.1-201ENST00000416316 871 ntBASIC25.98■■□□□ 1.75
COL2A1P02458 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC25.98■■□□□ 1.75
COL2A1P02458 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.98■■□□□ 1.75
COL2A1P02458 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC25.98■■□□□ 1.75
COL2A1P02458 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
COL2A1P02458 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC25.98■■□□□ 1.75
COL2A1P02458 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC25.98■■□□□ 1.75
COL2A1P02458 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC25.98■■□□□ 1.75
COL2A1P02458 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC25.97■■□□□ 1.75
COL2A1P02458 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
COL2A1P02458 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
COL2A1P02458 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.97■■□□□ 1.75
COL2A1P02458 AC092068.2-201ENST00000590491 1708 ntBASIC25.97■■□□□ 1.75
COL2A1P02458 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
COL2A1P02458 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
COL2A1P02458 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
COL2A1P02458 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC25.97■■□□□ 1.75
COL2A1P02458 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
COL2A1P02458 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC25.97■■□□□ 1.75
COL2A1P02458 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25.97■■□□□ 1.75
COL2A1P02458 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
COL2A1P02458 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC25.97■■□□□ 1.75
COL2A1P02458 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
COL2A1P02458 OXCT2P1-201ENST00000447263 1535 ntBASIC25.97■■□□□ 1.75
COL2A1P02458 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
COL2A1P02458 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
COL2A1P02458 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
COL2A1P02458 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC25.96■■□□□ 1.75
COL2A1P02458 GALNS-213ENST00000569433 723 ntTSL 3 BASIC25.96■■□□□ 1.75
COL2A1P02458 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC25.96■■□□□ 1.75
COL2A1P02458 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC25.96■■□□□ 1.75
COL2A1P02458 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
COL2A1P02458 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC25.95■■□□□ 1.75
COL2A1P02458 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC25.95■■□□□ 1.74
COL2A1P02458 CPT2-209ENST00000636935 803 ntTSL 5 BASIC25.95■■□□□ 1.74
COL2A1P02458 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC25.95■■□□□ 1.74
COL2A1P02458 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC25.94■■□□□ 1.74
COL2A1P02458 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms