Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CPSF4O95639 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CPSF4O95639 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CPSF4O95639 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CPSF4O95639 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.89■□□□□ 0.94
CPSF4O95639 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
CPSF4O95639 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CPSF4O95639 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CPSF4O95639 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPSF4O95639 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CPSF4O95639 RARRES2P1-201ENST00000474487 481 ntBASIC20.89■□□□□ 0.93
CPSF4O95639 MIR4787-201ENST00000607364 84 ntBASIC20.89■□□□□ 0.93
CPSF4O95639 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPSF4O95639 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPSF4O95639 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF4O95639 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF4O95639 AC139530.1-201ENST00000575312 1977 ntBASIC20.88■□□□□ 0.93
CPSF4O95639 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CPSF4O95639 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.88■□□□□ 0.93
CPSF4O95639 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF4O95639 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.88■□□□□ 0.93
CPSF4O95639 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF4O95639 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF4O95639 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF4O95639 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.88■□□□□ 0.93
CPSF4O95639 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF4O95639 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF4O95639 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF4O95639 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF4O95639 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF4O95639 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.88■□□□□ 0.93
CPSF4O95639 AC092053.2-201ENST00000640557 1818 ntBASIC20.88■□□□□ 0.93
CPSF4O95639 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.87■□□□□ 0.93
CPSF4O95639 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CPSF4O95639 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CPSF4O95639 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CPSF4O95639 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.87■□□□□ 0.93
CPSF4O95639 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.87■□□□□ 0.93
CPSF4O95639 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CPSF4O95639 AC239859.2-201ENST00000444165 318 ntBASIC20.87■□□□□ 0.93
CPSF4O95639 Z92544.1-202ENST00000571933 1220 ntBASIC20.87■□□□□ 0.93
CPSF4O95639 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CPSF4O95639 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CPSF4O95639 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CPSF4O95639 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CPSF4O95639 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CPSF4O95639 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CPSF4O95639 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CPSF4O95639 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CPSF4O95639 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CPSF4O95639 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CPSF4O95639 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CPSF4O95639 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CPSF4O95639 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CPSF4O95639 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CPSF4O95639 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CPSF4O95639 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CPSF4O95639 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CPSF4O95639 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CPSF4O95639 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CPSF4O95639 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
CPSF4O95639 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
CPSF4O95639 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CPSF4O95639 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.85■□□□□ 0.93
CPSF4O95639 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.85■□□□□ 0.93
CPSF4O95639 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CPSF4O95639 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.85■□□□□ 0.93
CPSF4O95639 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.85■□□□□ 0.93
CPSF4O95639 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CPSF4O95639 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.85■□□□□ 0.93
CPSF4O95639 DUX4L4-201ENST00000566884 1269 ntBASIC20.85■□□□□ 0.93
CPSF4O95639 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.85■□□□□ 0.93
CPSF4O95639 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CPSF4O95639 AC009102.2-201ENST00000606772 1639 ntBASIC20.85■□□□□ 0.93
CPSF4O95639 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.85■□□□□ 0.93
CPSF4O95639 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CPSF4O95639 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.85■□□□□ 0.93
CPSF4O95639 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CPSF4O95639 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CPSF4O95639 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CPSF4O95639 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CPSF4O95639 TSPY9P-201ENST00000440215 945 ntBASIC20.84■□□□□ 0.93
CPSF4O95639 TSPY11P-201ENST00000442607 1045 ntBASIC20.84■□□□□ 0.93
CPSF4O95639 AC010997.5-201ENST00000609182 354 ntBASIC20.84■□□□□ 0.93
CPSF4O95639 AC009086.3-201ENST00000623486 1008 ntBASIC20.84■□□□□ 0.93
CPSF4O95639 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CPSF4O95639 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CPSF4O95639 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CPSF4O95639 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CPSF4O95639 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
CPSF4O95639 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CPSF4O95639 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CPSF4O95639 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CPSF4O95639 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CPSF4O95639 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.93
CPSF4O95639 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CPSF4O95639 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
CPSF4O95639 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CPSF4O95639 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CPSF4O95639 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms