Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.02■□□□□ 0.96
SEMA3DO95025 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
SEMA3DO95025 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
SEMA3DO95025 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
SEMA3DO95025 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.95
SEMA3DO95025 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SEMA3DO95025 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SEMA3DO95025 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SEMA3DO95025 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SEMA3DO95025 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
SEMA3DO95025 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SEMA3DO95025 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SEMA3DO95025 AC006455.2-201ENST00000429931 906 ntBASIC21.01■□□□□ 0.95
SEMA3DO95025 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
SEMA3DO95025 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SEMA3DO95025 AC087742.1-201ENST00000575880 1738 ntBASIC21.01■□□□□ 0.95
SEMA3DO95025 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SEMA3DO95025 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.01■□□□□ 0.95
SEMA3DO95025 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SEMA3DO95025 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SEMA3DO95025 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
SEMA3DO95025 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SEMA3DO95025 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21■□□□□ 0.95
SEMA3DO95025 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SEMA3DO95025 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21■□□□□ 0.95
SEMA3DO95025 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SEMA3DO95025 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SEMA3DO95025 GUSBP5-202ENST00000510805 1989 ntBASIC21■□□□□ 0.95
SEMA3DO95025 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SEMA3DO95025 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SEMA3DO95025 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SEMA3DO95025 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SEMA3DO95025 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
SEMA3DO95025 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.99■□□□□ 0.95
SEMA3DO95025 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SEMA3DO95025 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SEMA3DO95025 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SEMA3DO95025 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SEMA3DO95025 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SEMA3DO95025 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.99■□□□□ 0.95
SEMA3DO95025 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SEMA3DO95025 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
SEMA3DO95025 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SEMA3DO95025 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SEMA3DO95025 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SEMA3DO95025 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.99■□□□□ 0.95
SEMA3DO95025 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.99■□□□□ 0.95
SEMA3DO95025 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.99■□□□□ 0.95
SEMA3DO95025 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.99■□□□□ 0.95
SEMA3DO95025 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.99■□□□□ 0.95
SEMA3DO95025 pRNA.6-201ENST00000610482 90 ntBASIC20.99■□□□□ 0.95
SEMA3DO95025 pRNA.5-201ENST00000612139 90 ntBASIC20.99■□□□□ 0.95
SEMA3DO95025 pRNA.11-201ENST00000618423 90 ntBASIC20.99■□□□□ 0.95
SEMA3DO95025 pRNA.13-201ENST00000619112 90 ntBASIC20.99■□□□□ 0.95
SEMA3DO95025 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SEMA3DO95025 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SEMA3DO95025 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SEMA3DO95025 LINC01960-201ENST00000563759 1884 ntBASIC20.98■□□□□ 0.95
SEMA3DO95025 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SEMA3DO95025 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SEMA3DO95025 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SEMA3DO95025 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SEMA3DO95025 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
SEMA3DO95025 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SEMA3DO95025 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SEMA3DO95025 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SEMA3DO95025 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.98■□□□□ 0.95
SEMA3DO95025 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.98■□□□□ 0.95
SEMA3DO95025 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.98■□□□□ 0.95
SEMA3DO95025 AC133637.1-201ENST00000624115 1537 ntBASIC20.98■□□□□ 0.95
SEMA3DO95025 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SEMA3DO95025 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SEMA3DO95025 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SEMA3DO95025 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SEMA3DO95025 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SEMA3DO95025 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.97■□□□□ 0.95
SEMA3DO95025 AC131281.2-201ENST00000520478 145 ntBASIC20.97■□□□□ 0.95
SEMA3DO95025 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.97■□□□□ 0.95
SEMA3DO95025 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SEMA3DO95025 MIR4466-201ENST00000606121 54 ntBASIC20.97■□□□□ 0.95
SEMA3DO95025 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.97■□□□□ 0.95
SEMA3DO95025 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.97■□□□□ 0.95
SEMA3DO95025 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SEMA3DO95025 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SEMA3DO95025 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SEMA3DO95025 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SEMA3DO95025 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SEMA3DO95025 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.96■□□□□ 0.95
SEMA3DO95025 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SEMA3DO95025 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SEMA3DO95025 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SEMA3DO95025 ECEL1P1-201ENST00000373592 1742 ntBASIC20.96■□□□□ 0.95
SEMA3DO95025 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SEMA3DO95025 MIR3181-201ENST00000578512 73 ntBASIC20.96■□□□□ 0.95
SEMA3DO95025 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.96■□□□□ 0.95
SEMA3DO95025 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SEMA3DO95025 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SEMA3DO95025 AC242852.2-201ENST00000615738 1807 ntBASIC20.96■□□□□ 0.95
SEMA3DO95025 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
SEMA3DO95025 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms