Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
UPK3AO75631 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
UPK3AO75631 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.69■□□□□ 0.74
UPK3AO75631 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.68■□□□□ 0.74
UPK3AO75631 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.68■□□□□ 0.74
UPK3AO75631 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
UPK3AO75631 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.68■□□□□ 0.74
UPK3AO75631 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.68■□□□□ 0.74
UPK3AO75631 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.68■□□□□ 0.74
UPK3AO75631 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.68■□□□□ 0.74
UPK3AO75631 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.68■□□□□ 0.74
UPK3AO75631 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
UPK3AO75631 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3AO75631 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
UPK3AO75631 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
UPK3AO75631 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
UPK3AO75631 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.67■□□□□ 0.74
UPK3AO75631 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
UPK3AO75631 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
UPK3AO75631 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
UPK3AO75631 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.67■□□□□ 0.74
UPK3AO75631 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
UPK3AO75631 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
UPK3AO75631 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.67■□□□□ 0.74
UPK3AO75631 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.67■□□□□ 0.74
UPK3AO75631 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
UPK3AO75631 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
UPK3AO75631 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.67■□□□□ 0.74
UPK3AO75631 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
UPK3AO75631 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
UPK3AO75631 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.67■□□□□ 0.74
UPK3AO75631 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.67■□□□□ 0.74
UPK3AO75631 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UPK3AO75631 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UPK3AO75631 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
UPK3AO75631 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UPK3AO75631 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
UPK3AO75631 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.66■□□□□ 0.74
UPK3AO75631 AC092171.4-201ENST00000609130 632 ntBASIC19.66■□□□□ 0.74
UPK3AO75631 pRNA.6-201ENST00000610482 90 ntBASIC19.66■□□□□ 0.74
UPK3AO75631 pRNA.5-201ENST00000612139 90 ntBASIC19.66■□□□□ 0.74
UPK3AO75631 pRNA.11-201ENST00000618423 90 ntBASIC19.66■□□□□ 0.74
UPK3AO75631 pRNA.13-201ENST00000619112 90 ntBASIC19.66■□□□□ 0.74
UPK3AO75631 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UPK3AO75631 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
UPK3AO75631 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
UPK3AO75631 AC137767.1-201ENST00000602918 1920 ntBASIC19.66■□□□□ 0.74
UPK3AO75631 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
UPK3AO75631 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
UPK3AO75631 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UPK3AO75631 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.66■□□□□ 0.74
UPK3AO75631 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
UPK3AO75631 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
UPK3AO75631 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
UPK3AO75631 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
UPK3AO75631 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
UPK3AO75631 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
UPK3AO75631 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.65■□□□□ 0.74
UPK3AO75631 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
UPK3AO75631 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
UPK3AO75631 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
UPK3AO75631 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.65■□□□□ 0.74
UPK3AO75631 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
UPK3AO75631 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
UPK3AO75631 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
UPK3AO75631 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
UPK3AO75631 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.74
UPK3AO75631 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
UPK3AO75631 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
UPK3AO75631 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.64■□□□□ 0.73
UPK3AO75631 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.64■□□□□ 0.73
UPK3AO75631 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.64■□□□□ 0.73
UPK3AO75631 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.64■□□□□ 0.73
UPK3AO75631 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.64■□□□□ 0.73
UPK3AO75631 SYT6-210ENST00000641643 1587 ntBASIC19.64■□□□□ 0.73
UPK3AO75631 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.64■□□□□ 0.73
UPK3AO75631 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.64■□□□□ 0.73
UPK3AO75631 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.64■□□□□ 0.73
UPK3AO75631 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
UPK3AO75631 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
UPK3AO75631 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.64■□□□□ 0.73
UPK3AO75631 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
UPK3AO75631 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
UPK3AO75631 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.63■□□□□ 0.73
UPK3AO75631 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms