Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LMX1BO60663 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LMX1BO60663 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LMX1BO60663 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
LMX1BO60663 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1BO60663 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1BO60663 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1BO60663 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1BO60663 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
LMX1BO60663 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.3■□□□□ 0.68
LMX1BO60663 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.3■□□□□ 0.68
LMX1BO60663 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
LMX1BO60663 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1BO60663 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1BO60663 ESRRAP2-201ENST00000418437 1549 ntBASIC19.3■□□□□ 0.68
LMX1BO60663 AC242852.2-201ENST00000615738 1807 ntBASIC19.3■□□□□ 0.68
LMX1BO60663 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1BO60663 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.3■□□□□ 0.68
LMX1BO60663 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1BO60663 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LMX1BO60663 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1BO60663 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.29■□□□□ 0.68
LMX1BO60663 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LMX1BO60663 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LMX1BO60663 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1BO60663 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.29■□□□□ 0.68
LMX1BO60663 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1BO60663 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1BO60663 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
LMX1BO60663 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.29■□□□□ 0.68
LMX1BO60663 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1BO60663 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LMX1BO60663 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1BO60663 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1BO60663 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1BO60663 AC144652.1-201ENST00000609974 1624 ntBASIC19.29■□□□□ 0.68
LMX1BO60663 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
LMX1BO60663 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LMX1BO60663 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LMX1BO60663 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LMX1BO60663 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.28■□□□□ 0.68
LMX1BO60663 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.28■□□□□ 0.68
LMX1BO60663 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.28■□□□□ 0.68
LMX1BO60663 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.28■□□□□ 0.68
LMX1BO60663 AC127496.7-201ENST00000625110 1798 ntBASIC19.28■□□□□ 0.68
LMX1BO60663 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LMX1BO60663 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LMX1BO60663 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LMX1BO60663 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
LMX1BO60663 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1BO60663 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.27■□□□□ 0.68
LMX1BO60663 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1BO60663 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1BO60663 AC080038.3-201ENST00000623346 1952 ntBASIC19.27■□□□□ 0.68
LMX1BO60663 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1BO60663 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1BO60663 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1BO60663 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.27■□□□□ 0.68
LMX1BO60663 ZNRF2P3-201ENST00000424200 374 ntBASIC19.27■□□□□ 0.68
LMX1BO60663 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1BO60663 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1BO60663 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
LMX1BO60663 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LMX1BO60663 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.27■□□□□ 0.67
LMX1BO60663 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LMX1BO60663 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.26■□□□□ 0.67
LMX1BO60663 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.26■□□□□ 0.67
LMX1BO60663 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1BO60663 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1BO60663 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1BO60663 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.26■□□□□ 0.67
LMX1BO60663 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1BO60663 RARRES2P6-201ENST00000567333 442 ntBASIC19.26■□□□□ 0.67
LMX1BO60663 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
LMX1BO60663 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
LMX1BO60663 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.26■□□□□ 0.67
LMX1BO60663 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1BO60663 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1BO60663 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1BO60663 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.26■□□□□ 0.67
LMX1BO60663 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.26■□□□□ 0.67
LMX1BO60663 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.26■□□□□ 0.67
LMX1BO60663 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
LMX1BO60663 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
LMX1BO60663 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1BO60663 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1BO60663 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1BO60663 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1BO60663 AC139530.1-201ENST00000575312 1977 ntBASIC19.25■□□□□ 0.67
LMX1BO60663 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
LMX1BO60663 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1BO60663 UNC93B3-201ENST00000308076 687 ntBASIC19.25■□□□□ 0.67
LMX1BO60663 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1BO60663 AC092666.2-201ENST00000613287 246 ntBASIC19.25■□□□□ 0.67
LMX1BO60663 MIR6722-201ENST00000617286 78 ntBASIC19.25■□□□□ 0.67
LMX1BO60663 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.25■□□□□ 0.67
LMX1BO60663 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.25■□□□□ 0.67
LMX1BO60663 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LMX1BO60663 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1BO60663 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms