Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 AC016575.1-201ENST00000607026 382 ntBASIC21.68■■□□□ 1.06
SNX3O60493 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.68■■□□□ 1.06
SNX3O60493 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
SNX3O60493 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
SNX3O60493 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SNX3O60493 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SNX3O60493 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SNX3O60493 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
SNX3O60493 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SNX3O60493 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SNX3O60493 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SNX3O60493 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.67■■□□□ 1.06
SNX3O60493 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SNX3O60493 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.67■■□□□ 1.06
SNX3O60493 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
SNX3O60493 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SNX3O60493 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SNX3O60493 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SNX3O60493 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SNX3O60493 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SNX3O60493 AF106564.1-201ENST00000607058 2553 ntBASIC21.66■■□□□ 1.06
SNX3O60493 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SNX3O60493 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.66■■□□□ 1.06
SNX3O60493 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
SNX3O60493 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SNX3O60493 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
SNX3O60493 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
SNX3O60493 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SNX3O60493 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SNX3O60493 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SNX3O60493 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.65■■□□□ 1.06
SNX3O60493 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.64■■□□□ 1.06
SNX3O60493 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
SNX3O60493 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SNX3O60493 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.64■■□□□ 1.06
SNX3O60493 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SNX3O60493 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SNX3O60493 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
SNX3O60493 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
SNX3O60493 FEM1AP4-201ENST00000443167 1987 ntBASIC21.64■■□□□ 1.05
SNX3O60493 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
SNX3O60493 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.64■■□□□ 1.05
SNX3O60493 Z98882.1-201ENST00000622160 2253 ntBASIC21.64■■□□□ 1.05
SNX3O60493 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SNX3O60493 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.64■■□□□ 1.05
SNX3O60493 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
SNX3O60493 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SNX3O60493 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SNX3O60493 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SNX3O60493 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SNX3O60493 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SNX3O60493 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SNX3O60493 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SNX3O60493 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
SNX3O60493 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SNX3O60493 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SNX3O60493 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.63■■□□□ 1.05
SNX3O60493 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
SNX3O60493 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX3O60493 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX3O60493 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.62■■□□□ 1.05
SNX3O60493 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX3O60493 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX3O60493 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
SNX3O60493 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.62■■□□□ 1.05
SNX3O60493 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
SNX3O60493 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SNX3O60493 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX3O60493 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.62■■□□□ 1.05
SNX3O60493 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX3O60493 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SNX3O60493 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX3O60493 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX3O60493 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX3O60493 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.62■■□□□ 1.05
SNX3O60493 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.61■■□□□ 1.05
SNX3O60493 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.61■■□□□ 1.05
SNX3O60493 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SNX3O60493 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.61■■□□□ 1.05
SNX3O60493 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms