Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.39■■□□□ 1.01
HDAC3O15379 ATP5G2P3-201ENST00000429083 425 ntBASIC21.39■■□□□ 1.01
HDAC3O15379 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.39■■□□□ 1.01
HDAC3O15379 AC010980.1-201ENST00000587192 1142 ntBASIC21.39■■□□□ 1.01
HDAC3O15379 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HDAC3O15379 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
HDAC3O15379 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.39■■□□□ 1.01
HDAC3O15379 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
HDAC3O15379 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
HDAC3O15379 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HDAC3O15379 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
HDAC3O15379 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
HDAC3O15379 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HDAC3O15379 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HDAC3O15379 AC004987.1-201ENST00000428627 508 ntBASIC21.38■■□□□ 1.01
HDAC3O15379 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HDAC3O15379 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.38■■□□□ 1.01
HDAC3O15379 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
HDAC3O15379 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
HDAC3O15379 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
HDAC3O15379 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
HDAC3O15379 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
HDAC3O15379 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
HDAC3O15379 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HDAC3O15379 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HDAC3O15379 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
HDAC3O15379 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.37■■□□□ 1.01
HDAC3O15379 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
HDAC3O15379 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HDAC3O15379 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.37■■□□□ 1.01
HDAC3O15379 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
HDAC3O15379 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
HDAC3O15379 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HDAC3O15379 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.37■■□□□ 1.01
HDAC3O15379 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
HDAC3O15379 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.37■■□□□ 1.01
HDAC3O15379 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
HDAC3O15379 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HDAC3O15379 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.36■■□□□ 1.01
HDAC3O15379 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
HDAC3O15379 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.36■■□□□ 1.01
HDAC3O15379 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.36■■□□□ 1.01
HDAC3O15379 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.36■■□□□ 1.01
HDAC3O15379 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.36■■□□□ 1.01
HDAC3O15379 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
HDAC3O15379 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
HDAC3O15379 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HDAC3O15379 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.35■■□□□ 1.01
HDAC3O15379 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.35■■□□□ 1.01
HDAC3O15379 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HDAC3O15379 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.35■■□□□ 1.01
HDAC3O15379 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HDAC3O15379 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.35■■□□□ 1.01
HDAC3O15379 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.35■■□□□ 1.01
HDAC3O15379 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
HDAC3O15379 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.35■■□□□ 1.01
HDAC3O15379 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
HDAC3O15379 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
HDAC3O15379 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HDAC3O15379 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
HDAC3O15379 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HDAC3O15379 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HDAC3O15379 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
HDAC3O15379 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HDAC3O15379 MIR4508-201ENST00000584178 70 ntBASIC21.34■■□□□ 1.01
HDAC3O15379 AC009086.3-201ENST00000623486 1008 ntBASIC21.34■■□□□ 1.01
HDAC3O15379 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.34■■□□□ 1.01
HDAC3O15379 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HDAC3O15379 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HDAC3O15379 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
HDAC3O15379 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
HDAC3O15379 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HDAC3O15379 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HDAC3O15379 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HDAC3O15379 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.33■■□□□ 1.01
HDAC3O15379 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.33■■□□□ 1.01
HDAC3O15379 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HDAC3O15379 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.33■■□□□ 1.01
HDAC3O15379 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HDAC3O15379 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HDAC3O15379 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HDAC3O15379 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HDAC3O15379 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.33■■□□□ 1
HDAC3O15379 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HDAC3O15379 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
HDAC3O15379 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.33■■□□□ 1
HDAC3O15379 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
HDAC3O15379 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.32■■□□□ 1
HDAC3O15379 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.32■■□□□ 1
HDAC3O15379 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
HDAC3O15379 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HDAC3O15379 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.32■■□□□ 1
HDAC3O15379 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.32■■□□□ 1
HDAC3O15379 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.32■■□□□ 1
HDAC3O15379 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HDAC3O15379 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HDAC3O15379 AC005703.6-201ENST00000623265 1329 ntBASIC21.31■■□□□ 1
HDAC3O15379 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HDAC3O15379 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.31■■□□□ 1
HDAC3O15379 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms