Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.55■□□□□ 0.72
NKX2-6A6NCS4 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.55■□□□□ 0.72
NKX2-6A6NCS4 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.55■□□□□ 0.72
NKX2-6A6NCS4 AC105233.4-201ENST00000642045 216 ntBASIC19.55■□□□□ 0.72
NKX2-6A6NCS4 FP325331.1-202ENST00000623531 1380 ntBASIC19.55■□□□□ 0.72
NKX2-6A6NCS4 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-6A6NCS4 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-6A6NCS4 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.53■□□□□ 0.72
NKX2-6A6NCS4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 AP005435.1-201ENST00000529293 1178 ntBASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
NKX2-6A6NCS4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
NKX2-6A6NCS4 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 LINC01529-204ENST00000636474 1715 ntBASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 AC144652.1-201ENST00000609974 1624 ntBASIC19.51■□□□□ 0.71
NKX2-6A6NCS4 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NKX2-6A6NCS4 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NKX2-6A6NCS4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NKX2-6A6NCS4 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NKX2-6A6NCS4 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
NKX2-6A6NCS4 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NKX2-6A6NCS4 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.5■□□□□ 0.71
NKX2-6A6NCS4 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-6A6NCS4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX2-6A6NCS4 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms