Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MIR663A-201ENST00000385250 93 ntBASIC42.32■■■■■ 4.37
SHROOM4Q9ULL8 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC42.32■■■■■ 4.37
SHROOM4Q9ULL8 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC42.32■■■■■ 4.37
SHROOM4Q9ULL8 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC42.32■■■■■ 4.37
SHROOM4Q9ULL8 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC42.31■■■■■ 4.36
SHROOM4Q9ULL8 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC42.31■■■■■ 4.36
SHROOM4Q9ULL8 CD99P1-205ENST00000527459 561 ntBASIC42.31■■■■■ 4.36
SHROOM4Q9ULL8 AP005435.1-201ENST00000529293 1178 ntBASIC42.31■■■■■ 4.36
SHROOM4Q9ULL8 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC42.31■■■■■ 4.36
SHROOM4Q9ULL8 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC42.31■■■■■ 4.36
SHROOM4Q9ULL8 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC42.3■■■■■ 4.36
SHROOM4Q9ULL8 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC42.3■■■■■ 4.36
SHROOM4Q9ULL8 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC42.3■■■■■ 4.36
SHROOM4Q9ULL8 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC42.3■■■■■ 4.36
SHROOM4Q9ULL8 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC42.3■■■■■ 4.36
SHROOM4Q9ULL8 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC42.3■■■■■ 4.36
SHROOM4Q9ULL8 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC42.3■■■■■ 4.36
SHROOM4Q9ULL8 AC010525.1-201ENST00000585559 441 ntBASIC42.3■■■■■ 4.36
SHROOM4Q9ULL8 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC42.29■■■■■ 4.36
SHROOM4Q9ULL8 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC42.29■■■■■ 4.36
SHROOM4Q9ULL8 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC42.29■■■■■ 4.36
SHROOM4Q9ULL8 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC42.29■■■■■ 4.36
SHROOM4Q9ULL8 LINC01124-201ENST00000409786 2117 ntBASIC42.29■■■■■ 4.36
SHROOM4Q9ULL8 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC42.28■■■■■ 4.36
SHROOM4Q9ULL8 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC42.28■■■■■ 4.36
SHROOM4Q9ULL8 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC42.28■■■■■ 4.36
SHROOM4Q9ULL8 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC42.28■■■■■ 4.36
SHROOM4Q9ULL8 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC42.28■■■■■ 4.36
SHROOM4Q9ULL8 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC42.27■■■■■ 4.36
SHROOM4Q9ULL8 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC42.27■■■■■ 4.36
SHROOM4Q9ULL8 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC42.27■■■■■ 4.36
SHROOM4Q9ULL8 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC42.27■■■■■ 4.36
SHROOM4Q9ULL8 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC42.27■■■■■ 4.36
SHROOM4Q9ULL8 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC42.27■■■■■ 4.36
SHROOM4Q9ULL8 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC42.27■■■■■ 4.36
SHROOM4Q9ULL8 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC42.27■■■■■ 4.36
SHROOM4Q9ULL8 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC42.26■■■■■ 4.36
SHROOM4Q9ULL8 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC42.26■■■■■ 4.36
SHROOM4Q9ULL8 AC004812.2-201ENST00000611079 2094 ntBASIC42.26■■■■■ 4.36
SHROOM4Q9ULL8 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC42.26■■■■■ 4.36
SHROOM4Q9ULL8 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC42.25■■■■■ 4.35
SHROOM4Q9ULL8 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC42.25■■■■■ 4.35
SHROOM4Q9ULL8 METTL26-203ENST00000397664 604 ntTSL 2 BASIC42.25■■■■■ 4.35
SHROOM4Q9ULL8 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC42.25■■■■■ 4.35
SHROOM4Q9ULL8 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC42.25■■■■■ 4.35
SHROOM4Q9ULL8 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC42.24■■■■■ 4.35
SHROOM4Q9ULL8 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC42.24■■■■■ 4.35
SHROOM4Q9ULL8 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC42.24■■■■■ 4.35
SHROOM4Q9ULL8 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC42.24■■■■■ 4.35
SHROOM4Q9ULL8 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC42.24■■■■■ 4.35
SHROOM4Q9ULL8 AC133637.1-201ENST00000624115 1537 ntBASIC42.23■■■■■ 4.35
SHROOM4Q9ULL8 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC42.23■■■■■ 4.35
SHROOM4Q9ULL8 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC42.23■■■■■ 4.35
SHROOM4Q9ULL8 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC42.23■■■■■ 4.35
SHROOM4Q9ULL8 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC42.23■■■■■ 4.35
SHROOM4Q9ULL8 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC42.23■■■■■ 4.35
SHROOM4Q9ULL8 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC42.23■■■■■ 4.35
SHROOM4Q9ULL8 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC42.23■■■■■ 4.35
SHROOM4Q9ULL8 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC42.22■■■■■ 4.35
SHROOM4Q9ULL8 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC42.22■■■■■ 4.35
SHROOM4Q9ULL8 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC42.22■■■■■ 4.35
SHROOM4Q9ULL8 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC42.22■■■■■ 4.35
SHROOM4Q9ULL8 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC42.22■■■■■ 4.35
SHROOM4Q9ULL8 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC42.21■■■■■ 4.35
SHROOM4Q9ULL8 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC42.21■■■■■ 4.35
SHROOM4Q9ULL8 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC42.21■■■■■ 4.35
SHROOM4Q9ULL8 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC42.21■■■■■ 4.35
SHROOM4Q9ULL8 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC42.21■■■■■ 4.35
SHROOM4Q9ULL8 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC42.21■■■■■ 4.35
SHROOM4Q9ULL8 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC42.2■■■■■ 4.35
SHROOM4Q9ULL8 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC42.2■■■■■ 4.35
SHROOM4Q9ULL8 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC42.2■■■■■ 4.35
SHROOM4Q9ULL8 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC42.2■■■■■ 4.35
SHROOM4Q9ULL8 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC42.2■■■■■ 4.35
SHROOM4Q9ULL8 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC42.2■■■■■ 4.35
SHROOM4Q9ULL8 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC42.2■■■■■ 4.35
SHROOM4Q9ULL8 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC42.2■■■■■ 4.35
SHROOM4Q9ULL8 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC42.2■■■■■ 4.35
SHROOM4Q9ULL8 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC42.19■■■■■ 4.34
SHROOM4Q9ULL8 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC42.19■■■■■ 4.34
SHROOM4Q9ULL8 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC42.19■■■■■ 4.34
SHROOM4Q9ULL8 GAMT-205ENST00000640762 751 ntTSL 5 BASIC42.19■■■■■ 4.34
SHROOM4Q9ULL8 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC42.19■■■■■ 4.34
SHROOM4Q9ULL8 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC42.19■■■■■ 4.34
SHROOM4Q9ULL8 AL139125.2-201ENST00000623134 1869 ntBASIC42.19■■■■■ 4.34
SHROOM4Q9ULL8 MFF-208ENST00000409616 1247 ntTSL 5 BASIC42.18■■■■■ 4.34
SHROOM4Q9ULL8 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC42.18■■■■■ 4.34
SHROOM4Q9ULL8 SHD-204ENST00000599689 1729 ntTSL 5 BASIC42.17■■■■■ 4.34
SHROOM4Q9ULL8 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC42.17■■■■■ 4.34
SHROOM4Q9ULL8 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC42.16■■■■■ 4.34
SHROOM4Q9ULL8 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC42.16■■■■■ 4.34
SHROOM4Q9ULL8 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC42.16■■■■■ 4.34
SHROOM4Q9ULL8 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC42.16■■■■■ 4.34
SHROOM4Q9ULL8 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC42.16■■■■■ 4.34
SHROOM4Q9ULL8 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC42.16■■■■■ 4.34
SHROOM4Q9ULL8 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC42.16■■■■■ 4.34
SHROOM4Q9ULL8 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC42.15■■■■■ 4.34
SHROOM4Q9ULL8 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC42.15■■■■■ 4.34
SHROOM4Q9ULL8 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC42.15■■■■■ 4.34
SHROOM4Q9ULL8 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC42.15■■■■■ 4.34
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms