Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 QDPR-206ENST00000508623 601 ntTSL 3 BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 LINC00565-201ENST00000562710 2331 ntBASIC23.78■■□□□ 1.4
SIX2Q9NPC8 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SIX2Q9NPC8 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SIX2Q9NPC8 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
SIX2Q9NPC8 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
SIX2Q9NPC8 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SIX2Q9NPC8 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SIX2Q9NPC8 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.77■■□□□ 1.4
SIX2Q9NPC8 AC006455.2-201ENST00000429931 906 ntBASIC23.77■■□□□ 1.4
SIX2Q9NPC8 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
SIX2Q9NPC8 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.77■■□□□ 1.4
SIX2Q9NPC8 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SIX2Q9NPC8 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SIX2Q9NPC8 LINC01960-201ENST00000563759 1884 ntBASIC23.77■■□□□ 1.4
SIX2Q9NPC8 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
SIX2Q9NPC8 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SIX2Q9NPC8 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SIX2Q9NPC8 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SIX2Q9NPC8 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SIX2Q9NPC8 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SIX2Q9NPC8 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC23.76■■□□□ 1.39
SIX2Q9NPC8 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SIX2Q9NPC8 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 AL512631.2-201ENST00000604634 923 ntBASIC23.75■■□□□ 1.39
SIX2Q9NPC8 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SIX2Q9NPC8 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 AL356740.2-201ENST00000601559 647 ntBASIC23.74■■□□□ 1.39
SIX2Q9NPC8 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
SIX2Q9NPC8 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SIX2Q9NPC8 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC23.72■■□□□ 1.39
SIX2Q9NPC8 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC23.72■■□□□ 1.39
SIX2Q9NPC8 AL356441.2-201ENST00000443009 864 ntBASIC23.72■■□□□ 1.39
SIX2Q9NPC8 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SIX2Q9NPC8 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.72■■□□□ 1.39
SIX2Q9NPC8 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC23.72■■□□□ 1.39
SIX2Q9NPC8 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms