Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
VPS13AQ96RL7 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
VPS13AQ96RL7 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
VPS13AQ96RL7 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
VPS13AQ96RL7 KRT18P29-201ENST00000397031 1267 ntBASIC22.12■■□□□ 1.13
VPS13AQ96RL7 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC22.12■■□□□ 1.13
VPS13AQ96RL7 UBE2DNL-204ENST00000602536 740 ntBASIC22.12■■□□□ 1.13
VPS13AQ96RL7 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
VPS13AQ96RL7 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.12■■□□□ 1.13
VPS13AQ96RL7 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
VPS13AQ96RL7 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 CNN2P6-201ENST00000439038 900 ntBASIC22.11■■□□□ 1.13
VPS13AQ96RL7 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.11■■□□□ 1.13
VPS13AQ96RL7 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.1■■□□□ 1.13
VPS13AQ96RL7 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
VPS13AQ96RL7 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
VPS13AQ96RL7 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
VPS13AQ96RL7 AC005181.1-201ENST00000604782 1256 ntBASIC22.1■■□□□ 1.13
VPS13AQ96RL7 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
VPS13AQ96RL7 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
VPS13AQ96RL7 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC22.1■■□□□ 1.13
VPS13AQ96RL7 SMUG1P1-201ENST00000590640 811 ntBASIC22.1■■□□□ 1.13
VPS13AQ96RL7 AC092118.2-201ENST00000613495 667 ntBASIC22.1■■□□□ 1.13
VPS13AQ96RL7 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
VPS13AQ96RL7 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.1■■□□□ 1.13
VPS13AQ96RL7 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
VPS13AQ96RL7 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 AC092803.2-201ENST00000564287 1899 ntBASIC22.09■■□□□ 1.13
VPS13AQ96RL7 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 AC141586.4-201ENST00000624558 1573 ntBASIC22.09■■□□□ 1.13
VPS13AQ96RL7 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
VPS13AQ96RL7 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC22.08■■□□□ 1.13
VPS13AQ96RL7 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
VPS13AQ96RL7 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC22.08■■□□□ 1.13
VPS13AQ96RL7 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC22.08■■□□□ 1.13
VPS13AQ96RL7 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
VPS13AQ96RL7 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.08■■□□□ 1.13
VPS13AQ96RL7 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
VPS13AQ96RL7 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
VPS13AQ96RL7 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
VPS13AQ96RL7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC22.08■■□□□ 1.13
VPS13AQ96RL7 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.08■■□□□ 1.13
VPS13AQ96RL7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
VPS13AQ96RL7 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
VPS13AQ96RL7 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
VPS13AQ96RL7 SLC7A5P1-201ENST00000568957 537 ntBASIC22.08■■□□□ 1.12
VPS13AQ96RL7 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
VPS13AQ96RL7 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 MFF-208ENST00000409616 1247 ntTSL 5 BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
VPS13AQ96RL7 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC22.06■■□□□ 1.12
VPS13AQ96RL7 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
VPS13AQ96RL7 MMAB-206ENST00000540016 945 ntTSL 3 BASIC22.06■■□□□ 1.12
VPS13AQ96RL7 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
VPS13AQ96RL7 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC22.06■■□□□ 1.12
VPS13AQ96RL7 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.06■■□□□ 1.12
VPS13AQ96RL7 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
VPS13AQ96RL7 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.05■■□□□ 1.12
VPS13AQ96RL7 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
VPS13AQ96RL7 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms