Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC26■■□□□ 1.75
BRF1Q92994 AC131281.2-201ENST00000520478 145 ntBASIC26■■□□□ 1.75
BRF1Q92994 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC26■■□□□ 1.75
BRF1Q92994 AL499627.2-201ENST00000606283 725 ntBASIC26■■□□□ 1.75
BRF1Q92994 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC26■■□□□ 1.75
BRF1Q92994 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC26■■□□□ 1.75
BRF1Q92994 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
BRF1Q92994 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC26■■□□□ 1.75
BRF1Q92994 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
BRF1Q92994 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
BRF1Q92994 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC25.99■■□□□ 1.75
BRF1Q92994 SRD5A1P1-201ENST00000442297 786 ntBASIC25.99■■□□□ 1.75
BRF1Q92994 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC25.99■■□□□ 1.75
BRF1Q92994 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
BRF1Q92994 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
BRF1Q92994 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
BRF1Q92994 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
BRF1Q92994 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
BRF1Q92994 GUSBP5-202ENST00000510805 1989 ntBASIC25.98■■□□□ 1.75
BRF1Q92994 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
BRF1Q92994 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
BRF1Q92994 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
BRF1Q92994 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
BRF1Q92994 AC087742.1-201ENST00000575880 1738 ntBASIC25.98■■□□□ 1.75
BRF1Q92994 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.98■■□□□ 1.75
BRF1Q92994 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.98■■□□□ 1.75
BRF1Q92994 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.98■■□□□ 1.75
BRF1Q92994 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
BRF1Q92994 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC25.98■■□□□ 1.75
BRF1Q92994 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC25.98■■□□□ 1.75
BRF1Q92994 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
BRF1Q92994 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
BRF1Q92994 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
BRF1Q92994 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
BRF1Q92994 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
BRF1Q92994 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
BRF1Q92994 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
BRF1Q92994 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
BRF1Q92994 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
BRF1Q92994 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.97■■□□□ 1.75
BRF1Q92994 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC25.97■■□□□ 1.75
BRF1Q92994 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC25.97■■□□□ 1.75
BRF1Q92994 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC25.97■■□□□ 1.75
BRF1Q92994 ESRRAP2-201ENST00000418437 1549 ntBASIC25.97■■□□□ 1.75
BRF1Q92994 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
BRF1Q92994 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC25.97■■□□□ 1.75
BRF1Q92994 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
BRF1Q92994 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
BRF1Q92994 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
BRF1Q92994 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
BRF1Q92994 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.96■■□□□ 1.75
BRF1Q92994 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.96■■□□□ 1.75
BRF1Q92994 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.96■■□□□ 1.75
BRF1Q92994 pRNA.6-201ENST00000610482 90 ntBASIC25.96■■□□□ 1.75
BRF1Q92994 pRNA.5-201ENST00000612139 90 ntBASIC25.96■■□□□ 1.75
BRF1Q92994 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.96■■□□□ 1.75
BRF1Q92994 pRNA.11-201ENST00000618423 90 ntBASIC25.96■■□□□ 1.75
BRF1Q92994 pRNA.13-201ENST00000619112 90 ntBASIC25.96■■□□□ 1.75
BRF1Q92994 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
BRF1Q92994 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
BRF1Q92994 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
BRF1Q92994 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
BRF1Q92994 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
BRF1Q92994 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
BRF1Q92994 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC25.95■■□□□ 1.74
BRF1Q92994 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
BRF1Q92994 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.95■■□□□ 1.74
BRF1Q92994 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC25.95■■□□□ 1.74
BRF1Q92994 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC25.95■■□□□ 1.74
BRF1Q92994 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
BRF1Q92994 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
BRF1Q92994 EP400NL-214ENST00000641289 2402 ntBASIC25.95■■□□□ 1.74
BRF1Q92994 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
BRF1Q92994 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
BRF1Q92994 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.94■■□□□ 1.74
BRF1Q92994 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC25.94■■□□□ 1.74
BRF1Q92994 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC25.94■■□□□ 1.74
BRF1Q92994 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
BRF1Q92994 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
BRF1Q92994 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
BRF1Q92994 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.93■■□□□ 1.74
BRF1Q92994 AC131212.1-201ENST00000613771 668 ntBASIC25.93■■□□□ 1.74
BRF1Q92994 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC25.93■■□□□ 1.74
BRF1Q92994 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
BRF1Q92994 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC25.92■■□□□ 1.74
BRF1Q92994 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
BRF1Q92994 LINC01960-201ENST00000563759 1884 ntBASIC25.92■■□□□ 1.74
BRF1Q92994 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.92■■□□□ 1.74
BRF1Q92994 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.92■■□□□ 1.74
BRF1Q92994 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.92■■□□□ 1.74
BRF1Q92994 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
BRF1Q92994 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
BRF1Q92994 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
BRF1Q92994 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
BRF1Q92994 AC127496.7-201ENST00000625110 1798 ntBASIC25.92■■□□□ 1.74
BRF1Q92994 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC25.91■■□□□ 1.74
BRF1Q92994 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
BRF1Q92994 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
BRF1Q92994 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.91■■□□□ 1.74
BRF1Q92994 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms