Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB4Q8WW32 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
HMGB4Q8WW32 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB4Q8WW32 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB4Q8WW32 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22.24■■□□□ 1.15
HMGB4Q8WW32 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC22.24■■□□□ 1.15
HMGB4Q8WW32 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC22.24■■□□□ 1.15
HMGB4Q8WW32 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB4Q8WW32 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC22.24■■□□□ 1.15
HMGB4Q8WW32 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB4Q8WW32 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB4Q8WW32 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB4Q8WW32 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
HMGB4Q8WW32 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB4Q8WW32 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
HMGB4Q8WW32 AC004687.1-201ENST00000579003 1625 ntBASIC22.23■■□□□ 1.15
HMGB4Q8WW32 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.23■■□□□ 1.15
HMGB4Q8WW32 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB4Q8WW32 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
HMGB4Q8WW32 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB4Q8WW32 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB4Q8WW32 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB4Q8WW32 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB4Q8WW32 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC22.22■■□□□ 1.15
HMGB4Q8WW32 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB4Q8WW32 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
HMGB4Q8WW32 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB4Q8WW32 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.21■■□□□ 1.15
HMGB4Q8WW32 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
HMGB4Q8WW32 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
HMGB4Q8WW32 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB4Q8WW32 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.21■■□□□ 1.15
HMGB4Q8WW32 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22.21■■□□□ 1.15
HMGB4Q8WW32 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB4Q8WW32 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB4Q8WW32 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.21■■□□□ 1.15
HMGB4Q8WW32 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC22.2■■□□□ 1.15
HMGB4Q8WW32 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
HMGB4Q8WW32 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
HMGB4Q8WW32 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGB4Q8WW32 AC016769.1-201ENST00000409132 1010 ntBASIC22.2■■□□□ 1.14
HMGB4Q8WW32 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC22.2■■□□□ 1.14
HMGB4Q8WW32 AC137761.2-201ENST00000561729 223 ntBASIC22.2■■□□□ 1.14
HMGB4Q8WW32 AC145350.3-201ENST00000569033 163 ntBASIC22.2■■□□□ 1.14
HMGB4Q8WW32 GALNS-213ENST00000569433 723 ntTSL 3 BASIC22.2■■□□□ 1.14
HMGB4Q8WW32 KRT18P61-201ENST00000585825 1298 ntBASIC22.2■■□□□ 1.14
HMGB4Q8WW32 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
HMGB4Q8WW32 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
HMGB4Q8WW32 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGB4Q8WW32 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGB4Q8WW32 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB4Q8WW32 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB4Q8WW32 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC22.19■■□□□ 1.14
HMGB4Q8WW32 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC22.19■■□□□ 1.14
HMGB4Q8WW32 TPRG1LP1-201ENST00000598702 760 ntBASIC22.19■■□□□ 1.14
HMGB4Q8WW32 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC22.19■■□□□ 1.14
HMGB4Q8WW32 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC22.19■■□□□ 1.14
HMGB4Q8WW32 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
HMGB4Q8WW32 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
HMGB4Q8WW32 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB4Q8WW32 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB4Q8WW32 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.19■■□□□ 1.14
HMGB4Q8WW32 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 AC079630.1-202ENST00000618127 1840 ntBASIC22.18■■□□□ 1.14
HMGB4Q8WW32 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 COX20-201ENST00000366528 568 ntTSL 2 BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 AC080038.1-201ENST00000611274 1154 ntBASIC22.18■■□□□ 1.14
HMGB4Q8WW32 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC22.18■■□□□ 1.14
HMGB4Q8WW32 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms