Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 HGH1-207ENST00000628266 258 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 ANOS2P-203ENST00000472227 1816 ntBASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 RPS2-210ENST00000530225 765 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC28AQ8IWP9 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28AQ8IWP9 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC28AQ8IWP9 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC28AQ8IWP9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC28AQ8IWP9 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
CCDC28AQ8IWP9 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC28AQ8IWP9 AC092053.2-201ENST00000640557 1818 ntBASIC18.33■□□□□ 0.53
CCDC28AQ8IWP9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC28AQ8IWP9 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CCDC28AQ8IWP9 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CCDC28AQ8IWP9 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 LINC01971-201ENST00000617888 1048 ntBASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28AQ8IWP9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms