Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RETREG3Q86VR2 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RETREG3Q86VR2 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RETREG3Q86VR2 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RETREG3Q86VR2 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RETREG3Q86VR2 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
RETREG3Q86VR2 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.02■□□□□ 0.96
RETREG3Q86VR2 SNX5-217ENST00000606557 1087 ntBASIC21.02■□□□□ 0.96
RETREG3Q86VR2 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.02■□□□□ 0.96
RETREG3Q86VR2 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 NTF6A-201ENST00000591175 560 ntBASIC21.01■□□□□ 0.95
RETREG3Q86VR2 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.01■□□□□ 0.95
RETREG3Q86VR2 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
RETREG3Q86VR2 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21■□□□□ 0.95
RETREG3Q86VR2 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21■□□□□ 0.95
RETREG3Q86VR2 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21■□□□□ 0.95
RETREG3Q86VR2 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RETREG3Q86VR2 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RETREG3Q86VR2 AC004987.1-201ENST00000428627 508 ntBASIC21■□□□□ 0.95
RETREG3Q86VR2 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21■□□□□ 0.95
RETREG3Q86VR2 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21■□□□□ 0.95
RETREG3Q86VR2 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
RETREG3Q86VR2 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RETREG3Q86VR2 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
RETREG3Q86VR2 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RETREG3Q86VR2 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21■□□□□ 0.95
RETREG3Q86VR2 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RETREG3Q86VR2 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RETREG3Q86VR2 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RETREG3Q86VR2 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.99■□□□□ 0.95
RETREG3Q86VR2 AC010980.1-201ENST00000587192 1142 ntBASIC20.99■□□□□ 0.95
RETREG3Q86VR2 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.99■□□□□ 0.95
RETREG3Q86VR2 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RETREG3Q86VR2 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RETREG3Q86VR2 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
RETREG3Q86VR2 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.98■□□□□ 0.95
RETREG3Q86VR2 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RETREG3Q86VR2 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.98■□□□□ 0.95
RETREG3Q86VR2 ATP5G2P3-201ENST00000429083 425 ntBASIC20.98■□□□□ 0.95
RETREG3Q86VR2 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.98■□□□□ 0.95
RETREG3Q86VR2 AC074183.2-201ENST00000623112 922 ntBASIC20.98■□□□□ 0.95
RETREG3Q86VR2 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.98■□□□□ 0.95
RETREG3Q86VR2 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RETREG3Q86VR2 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RETREG3Q86VR2 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RETREG3Q86VR2 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RETREG3Q86VR2 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RETREG3Q86VR2 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RETREG3Q86VR2 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
RETREG3Q86VR2 ABHD17AP5-201ENST00000580133 923 ntBASIC20.97■□□□□ 0.95
RETREG3Q86VR2 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
RETREG3Q86VR2 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.97■□□□□ 0.95
RETREG3Q86VR2 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RETREG3Q86VR2 LINC01529-204ENST00000636474 1715 ntBASIC20.97■□□□□ 0.95
RETREG3Q86VR2 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
RETREG3Q86VR2 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RETREG3Q86VR2 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RETREG3Q86VR2 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RETREG3Q86VR2 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RETREG3Q86VR2 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.96■□□□□ 0.95
RETREG3Q86VR2 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RETREG3Q86VR2 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.96■□□□□ 0.95
RETREG3Q86VR2 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RETREG3Q86VR2 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RETREG3Q86VR2 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.95■□□□□ 0.94
RETREG3Q86VR2 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RETREG3Q86VR2 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.95■□□□□ 0.94
RETREG3Q86VR2 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RETREG3Q86VR2 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.95■□□□□ 0.94
RETREG3Q86VR2 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
RETREG3Q86VR2 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RETREG3Q86VR2 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
RETREG3Q86VR2 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RETREG3Q86VR2 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RETREG3Q86VR2 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.95■□□□□ 0.94
RETREG3Q86VR2 LINC01960-201ENST00000563759 1884 ntBASIC20.94■□□□□ 0.94
RETREG3Q86VR2 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.94■□□□□ 0.94
RETREG3Q86VR2 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.94■□□□□ 0.94
RETREG3Q86VR2 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.94■□□□□ 0.94
RETREG3Q86VR2 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RETREG3Q86VR2 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.94■□□□□ 0.94
RETREG3Q86VR2 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.94■□□□□ 0.94
RETREG3Q86VR2 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms