Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CSPG4Q6UVK1 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CSPG4Q6UVK1 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CSPG4Q6UVK1 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CSPG4Q6UVK1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 OR2I1P-207ENST00000453522 948 ntBASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 MIR4651-201ENST00000582622 73 ntBASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.32■□□□□ 0.52
CSPG4Q6UVK1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.31■□□□□ 0.52
CSPG4Q6UVK1 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.3■□□□□ 0.52
CSPG4Q6UVK1 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CSPG4Q6UVK1 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CSPG4Q6UVK1 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CSPG4Q6UVK1 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CSPG4Q6UVK1 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CSPG4Q6UVK1 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CSPG4Q6UVK1 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CSPG4Q6UVK1 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 AC105233.4-201ENST00000642045 216 ntBASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 BX005040.4-201ENST00000637145 1518 ntBASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CSPG4Q6UVK1 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 DUX4L4-201ENST00000566884 1269 ntBASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 AC073210.2-201ENST00000430369 194 ntBASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CSPG4Q6UVK1 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CSPG4Q6UVK1 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CSPG4Q6UVK1 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CSPG4Q6UVK1 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CSPG4Q6UVK1 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.27■□□□□ 0.52
CSPG4Q6UVK1 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.27■□□□□ 0.52
CSPG4Q6UVK1 AL161729.1-201ENST00000604104 1402 ntBASIC18.27■□□□□ 0.52
CSPG4Q6UVK1 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC18.27■□□□□ 0.52
CSPG4Q6UVK1 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CSPG4Q6UVK1 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
CSPG4Q6UVK1 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.27■□□□□ 0.51
CSPG4Q6UVK1 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CSPG4Q6UVK1 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CSPG4Q6UVK1 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CSPG4Q6UVK1 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.26■□□□□ 0.51
CSPG4Q6UVK1 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CSPG4Q6UVK1 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CSPG4Q6UVK1 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CSPG4Q6UVK1 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.26■□□□□ 0.51
CSPG4Q6UVK1 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.26■□□□□ 0.51
CSPG4Q6UVK1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CSPG4Q6UVK1 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC18.26■□□□□ 0.51
CSPG4Q6UVK1 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms