Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC12.38□□□□□ -0.43
UBR4Q5T4S7 TESC-206ENST00000541210 936 ntTSL 3 BASIC12.38□□□□□ -0.43
UBR4Q5T4S7 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC12.38□□□□□ -0.43
UBR4Q5T4S7 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC12.38□□□□□ -0.43
UBR4Q5T4S7 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC12.38□□□□□ -0.43
UBR4Q5T4S7 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
UBR4Q5T4S7 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 MIPEPP3-201ENST00000412105 444 ntBASIC12.37□□□□□ -0.43
UBR4Q5T4S7 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 AP000593.1-201ENST00000393668 712 ntBASIC12.37□□□□□ -0.43
UBR4Q5T4S7 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 CD177P1-201ENST00000606252 935 ntBASIC12.37□□□□□ -0.43
UBR4Q5T4S7 AL590326.2-201ENST00000625139 305 ntBASIC12.37□□□□□ -0.43
UBR4Q5T4S7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
UBR4Q5T4S7 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 AC133552.2-202ENST00000575694 574 ntBASIC12.36□□□□□ -0.43
UBR4Q5T4S7 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 USF2-205ENST00000594064 1179 ntTSL 2 BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
UBR4Q5T4S7 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 RMI2-205ENST00000576027 818 ntTSL 2 BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 MIR4758-201ENST00000577688 71 ntBASIC12.35□□□□□ -0.43
UBR4Q5T4S7 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 MKRN4P-201ENST00000444706 1521 ntBASIC12.35□□□□□ -0.43
UBR4Q5T4S7 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC12.35□□□□□ -0.43
UBR4Q5T4S7 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 AL359736.2-201ENST00000621992 437 ntBASIC12.34□□□□□ -0.43
UBR4Q5T4S7 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC12.34□□□□□ -0.43
UBR4Q5T4S7 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBR4Q5T4S7 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms