Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RUNDC3AQ59EK9 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RUNDC3AQ59EK9 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RUNDC3AQ59EK9 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
RUNDC3AQ59EK9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RUNDC3AQ59EK9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.83■□□□□ 0.93
RUNDC3AQ59EK9 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.83■□□□□ 0.93
RUNDC3AQ59EK9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RUNDC3AQ59EK9 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
RUNDC3AQ59EK9 FBXW4P1-201ENST00000426721 2239 ntBASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 AC103724.3-201ENST00000564481 992 ntBASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RUNDC3AQ59EK9 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
RUNDC3AQ59EK9 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 AL137060.1-201ENST00000618151 2648 ntBASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 MIR6722-201ENST00000617286 78 ntBASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.8■□□□□ 0.92
RUNDC3AQ59EK9 AC005703.6-201ENST00000623265 1329 ntBASIC20.79■□□□□ 0.92
RUNDC3AQ59EK9 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.79■□□□□ 0.92
RUNDC3AQ59EK9 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RUNDC3AQ59EK9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RUNDC3AQ59EK9 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
RUNDC3AQ59EK9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.79■□□□□ 0.92
RUNDC3AQ59EK9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.79■□□□□ 0.92
RUNDC3AQ59EK9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.79■□□□□ 0.92
RUNDC3AQ59EK9 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
RUNDC3AQ59EK9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
RUNDC3AQ59EK9 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
RUNDC3AQ59EK9 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RUNDC3AQ59EK9 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
RUNDC3AQ59EK9 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RUNDC3AQ59EK9 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
RUNDC3AQ59EK9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.78■□□□□ 0.92
RUNDC3AQ59EK9 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
RUNDC3AQ59EK9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.78■□□□□ 0.92
RUNDC3AQ59EK9 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.78■□□□□ 0.92
RUNDC3AQ59EK9 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RUNDC3AQ59EK9 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 DUX4L4-201ENST00000566884 1269 ntBASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
RUNDC3AQ59EK9 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.77■□□□□ 0.91
RUNDC3AQ59EK9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
RUNDC3AQ59EK9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RUNDC3AQ59EK9 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.76■□□□□ 0.91
RUNDC3AQ59EK9 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RUNDC3AQ59EK9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RUNDC3AQ59EK9 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
RUNDC3AQ59EK9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.76■□□□□ 0.91
RUNDC3AQ59EK9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.76■□□□□ 0.91
RUNDC3AQ59EK9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms