Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
ZNF404Q494X3 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF404Q494X3 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF404Q494X3 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF404Q494X3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.91■□□□□ 0.78
ZNF404Q494X3 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
ZNF404Q494X3 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF404Q494X3 AL161729.1-201ENST00000604104 1402 ntBASIC19.91■□□□□ 0.78
ZNF404Q494X3 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF404Q494X3 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF404Q494X3 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF404Q494X3 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF404Q494X3 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF404Q494X3 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
ZNF404Q494X3 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.9■□□□□ 0.78
ZNF404Q494X3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.9■□□□□ 0.78
ZNF404Q494X3 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF404Q494X3 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF404Q494X3 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF404Q494X3 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF404Q494X3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
ZNF404Q494X3 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF404Q494X3 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF404Q494X3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF404Q494X3 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF404Q494X3 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
ZNF404Q494X3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF404Q494X3 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF404Q494X3 RARRES2P1-201ENST00000474487 481 ntBASIC19.89■□□□□ 0.77
ZNF404Q494X3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.89■□□□□ 0.77
ZNF404Q494X3 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF404Q494X3 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF404Q494X3 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.89■□□□□ 0.77
ZNF404Q494X3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF404Q494X3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF404Q494X3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF404Q494X3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
ZNF404Q494X3 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF404Q494X3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF404Q494X3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF404Q494X3 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF404Q494X3 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
ZNF404Q494X3 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF404Q494X3 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF404Q494X3 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF404Q494X3 MIR4508-201ENST00000584178 70 ntBASIC19.88■□□□□ 0.77
ZNF404Q494X3 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF404Q494X3 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.88■□□□□ 0.77
ZNF404Q494X3 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.88■□□□□ 0.77
ZNF404Q494X3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF404Q494X3 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.87■□□□□ 0.77
ZNF404Q494X3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF404Q494X3 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF404Q494X3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.87■□□□□ 0.77
ZNF404Q494X3 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.87■□□□□ 0.77
ZNF404Q494X3 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF404Q494X3 KRT8P33-201ENST00000508125 1423 ntBASIC19.87■□□□□ 0.77
ZNF404Q494X3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF404Q494X3 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.87■□□□□ 0.77
ZNF404Q494X3 YBX1P4-201ENST00000392794 808 ntBASIC19.87■□□□□ 0.77
ZNF404Q494X3 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.87■□□□□ 0.77
ZNF404Q494X3 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF404Q494X3 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.87■□□□□ 0.77
ZNF404Q494X3 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF404Q494X3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF404Q494X3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF404Q494X3 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.87■□□□□ 0.77
ZNF404Q494X3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF404Q494X3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF404Q494X3 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
ZNF404Q494X3 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
ZNF404Q494X3 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF404Q494X3 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF404Q494X3 AC103834.1-201ENST00000520383 144 ntBASIC19.86■□□□□ 0.77
ZNF404Q494X3 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.86■□□□□ 0.77
ZNF404Q494X3 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF404Q494X3 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF404Q494X3 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF404Q494X3 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF404Q494X3 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF404Q494X3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF404Q494X3 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.85■□□□□ 0.77
ZNF404Q494X3 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.85■□□□□ 0.77
ZNF404Q494X3 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.85■□□□□ 0.77
ZNF404Q494X3 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
ZNF404Q494X3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF404Q494X3 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.85■□□□□ 0.77
ZNF404Q494X3 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF404Q494X3 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
ZNF404Q494X3 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
ZNF404Q494X3 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF404Q494X3 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF404Q494X3 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF404Q494X3 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF404Q494X3 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF404Q494X3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF404Q494X3 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.84■□□□□ 0.77
ZNF404Q494X3 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.84■□□□□ 0.77
ZNF404Q494X3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.84■□□□□ 0.77
ZNF404Q494X3 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms