Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX2P48431 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX2P48431 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX2P48431 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SOX2P48431 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX2P48431 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX2P48431 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX2P48431 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SOX2P48431 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX2P48431 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.37■□□□□ 0.69
SOX2P48431 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SOX2P48431 ABHD17AP5-201ENST00000580133 923 ntBASIC19.37■□□□□ 0.69
SOX2P48431 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SOX2P48431 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX2P48431 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
SOX2P48431 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX2P48431 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SOX2P48431 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX2P48431 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX2P48431 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.36■□□□□ 0.69
SOX2P48431 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX2P48431 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX2P48431 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX2P48431 AC010980.1-201ENST00000587192 1142 ntBASIC19.36■□□□□ 0.69
SOX2P48431 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SOX2P48431 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SOX2P48431 FBXW4P1-201ENST00000426721 2239 ntBASIC19.36■□□□□ 0.69
SOX2P48431 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX2P48431 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SOX2P48431 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SOX2P48431 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX2P48431 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX2P48431 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX2P48431 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX2P48431 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SOX2P48431 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX2P48431 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SOX2P48431 AC004987.1-201ENST00000428627 508 ntBASIC19.34■□□□□ 0.69
SOX2P48431 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.34■□□□□ 0.69
SOX2P48431 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SOX2P48431 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.34■□□□□ 0.69
SOX2P48431 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.34■□□□□ 0.69
SOX2P48431 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SOX2P48431 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SOX2P48431 AC087742.1-201ENST00000575880 1738 ntBASIC19.34■□□□□ 0.69
SOX2P48431 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
SOX2P48431 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.33■□□□□ 0.69
SOX2P48431 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
SOX2P48431 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.33■□□□□ 0.69
SOX2P48431 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
SOX2P48431 AC144652.1-201ENST00000609974 1624 ntBASIC19.33■□□□□ 0.69
SOX2P48431 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SOX2P48431 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SOX2P48431 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
SOX2P48431 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SOX2P48431 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.33■□□□□ 0.68
SOX2P48431 ATP5G2P3-201ENST00000429083 425 ntBASIC19.33■□□□□ 0.68
SOX2P48431 AC074183.2-201ENST00000623112 922 ntBASIC19.33■□□□□ 0.68
SOX2P48431 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
SOX2P48431 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SOX2P48431 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SOX2P48431 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SOX2P48431 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SOX2P48431 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SOX2P48431 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SOX2P48431 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SOX2P48431 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SOX2P48431 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SOX2P48431 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SOX2P48431 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.32■□□□□ 0.68
SOX2P48431 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.32■□□□□ 0.68
SOX2P48431 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SOX2P48431 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SOX2P48431 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX2P48431 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX2P48431 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX2P48431 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.31■□□□□ 0.68
SOX2P48431 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SOX2P48431 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX2P48431 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX2P48431 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SOX2P48431 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.31■□□□□ 0.68
SOX2P48431 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.31■□□□□ 0.68
SOX2P48431 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.31■□□□□ 0.68
SOX2P48431 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.31■□□□□ 0.68
SOX2P48431 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
SOX2P48431 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX2P48431 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SOX2P48431 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX2P48431 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.3■□□□□ 0.68
SOX2P48431 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SOX2P48431 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SOX2P48431 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SOX2P48431 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SOX2P48431 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX2P48431 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SOX2P48431 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.3■□□□□ 0.68
SOX2P48431 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX2P48431 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SOX2P48431 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms