Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 DIT1YDR403W 1611 nt3.37□□□□□ -1.87
CUP9P41817 GSH2YOL049W 1476 nt3.37□□□□□ -1.87
CUP9P41817 LNP1YHR192W 837 nt3.37□□□□□ -1.87
CUP9P41817 SDS3YIL084C 984 nt3.37□□□□□ -1.87
CUP9P41817 YLR374CYLR374C 390 nt3.37□□□□□ -1.87
CUP9P41817 SPT23YKL020C 3249 nt3.37□□□□□ -1.87
CUP9P41817 OPT2YPR194C 2634 nt3.37□□□□□ -1.87
CUP9P41817 LAP2YNL045W 2016 nt3.36□□□□□ -1.87
CUP9P41817 RPB7YDR404C 516 nt3.36□□□□□ -1.87
CUP9P41817 MHO1YJR008W 1017 nt3.36□□□□□ -1.87
CUP9P41817 ADD66YKL206C 804 nt3.36□□□□□ -1.87
CUP9P41817 COQ5YML110C 924 nt3.36□□□□□ -1.87
CUP9P41817 FAA1YOR317W 2103 nt3.36□□□□□ -1.87
CUP9P41817 YPL114WYPL114W 420 nt3.36□□□□□ -1.87
CUP9P41817 SRO7YPR032W 3102 nt3.36□□□□□ -1.87
CUP9P41817 RSC3YDR303C 2658 nt3.36□□□□□ -1.87
CUP9P41817 OMS1YDR316W 1416 nt3.36□□□□□ -1.87
CUP9P41817 ECM22YLR228C 2445 nt3.35□□□□□ -1.87
CUP9P41817 JEN1YKL217W 1851 nt3.35□□□□□ -1.87
CUP9P41817 LPP1YDR503C 825 nt3.35□□□□□ -1.87
CUP9P41817 REC104YHR157W 549 nt3.35□□□□□ -1.87
CUP9P41817 GVP36YIL041W 981 nt3.35□□□□□ -1.87
CUP9P41817 JLP1YLL057C 1239 nt3.35□□□□□ -1.87
CUP9P41817 YMR084WYMR084W 789 nt3.35□□□□□ -1.87
CUP9P41817 MTC4YBR255W 2085 nt3.35□□□□□ -1.87
CUP9P41817 VPS53YJL029C 2469 nt3.35□□□□□ -1.87
CUP9P41817 SAT4YCR008W 1812 nt3.35□□□□□ -1.87
CUP9P41817 CEX1YOR112W 2286 nt3.35□□□□□ -1.87
CUP9P41817 GAC1YOR178C 2382 nt3.34□□□□□ -1.87
CUP9P41817 PRP9YDL030W 1593 nt3.34□□□□□ -1.87
CUP9P41817 SEO1YAL067C 1782 nt3.34□□□□□ -1.87
CUP9P41817 UBC1YDR177W 648 nt3.34□□□□□ -1.87
CUP9P41817 YER034WYER034W 558 nt3.34□□□□□ -1.87
CUP9P41817 YGR139WYGR139W 339 nt3.34□□□□□ -1.87
CUP9P41817 CYC1YJR048W 330 nt3.34□□□□□ -1.87
CUP9P41817 RRT7YLL030C 342 nt3.34□□□□□ -1.87
CUP9P41817 MFM1YPL060W 1242 nt3.34□□□□□ -1.87
CUP9P41817 OPY1YBR129C 987 nt3.34□□□□□ -1.87
CUP9P41817 YBR219CYBR219C 384 nt3.34□□□□□ -1.87
CUP9P41817 YDL109CYDL109C 1944 nt3.33□□□□□ -1.88
CUP9P41817 YGR011WYGR011W 327 nt3.33□□□□□ -1.88
CUP9P41817 GTT2YLL060C 702 nt3.33□□□□□ -1.88
CUP9P41817 RIB4YOL143C 510 nt3.33□□□□□ -1.88
CUP9P41817 SET6YPL165C 1122 nt3.33□□□□□ -1.88
CUP9P41817 POF1YCL047C 777 nt3.33□□□□□ -1.88
CUP9P41817 LAP3YNL239W 1365 nt3.33□□□□□ -1.88
CUP9P41817 RDS1YCR106W 2499 nt3.33□□□□□ -1.88
CUP9P41817 CDC14YFR028C 1656 nt3.33□□□□□ -1.88
CUP9P41817 MLH2YLR035C 2088 nt3.32□□□□□ -1.88
CUP9P41817 TIP20YGL145W 2106 nt3.32□□□□□ -1.88
CUP9P41817 GLN4YOR168W 2430 nt3.32□□□□□ -1.88
CUP9P41817 RPO31YOR116C 4383 nt3.32□□□□□ -1.88
CUP9P41817 GPI13YLL031C 3054 nt3.32□□□□□ -1.88
CUP9P41817 SNM1YDR478W 597 nt3.32□□□□□ -1.88
CUP9P41817 COS4YFL062W 1140 nt3.32□□□□□ -1.88
CUP9P41817 SAE3YHR079C-A 276 nt3.32□□□□□ -1.88
CUP9P41817 YRA2YKL214C 612 nt3.32□□□□□ -1.88
CUP9P41817 COS3YML132W 1140 nt3.32□□□□□ -1.88
CUP9P41817 CTR1YPR124W 1221 nt3.32□□□□□ -1.88
CUP9P41817 COS2YBR302C 1140 nt3.32□□□□□ -1.88
CUP9P41817 CDS1YBR029C 1374 nt3.32□□□□□ -1.88
CUP9P41817 RAD4YER162C 2265 nt3.32□□□□□ -1.88
CUP9P41817 MCM7YBR202W 2538 nt3.32□□□□□ -1.88
CUP9P41817 CDC45YLR103C 1953 nt3.31□□□□□ -1.88
CUP9P41817 MMR1YLR190W 1476 nt3.31□□□□□ -1.88
CUP9P41817 GAS5YOL030W 1455 nt3.31□□□□□ -1.88
CUP9P41817 FMP30YPL103C 1407 nt3.31□□□□□ -1.88
CUP9P41817 RPS13YDR064W 456 nt3.31□□□□□ -1.88
CUP9P41817 YLR156WYLR156W 345 nt3.31□□□□□ -1.88
CUP9P41817 YLR159WYLR159W 345 nt3.31□□□□□ -1.88
CUP9P41817 YLR161WYLR161W 345 nt3.31□□□□□ -1.88
CUP9P41817 YPT53YNL093W 663 nt3.31□□□□□ -1.88
CUP9P41817 UTP23YOR004W 765 nt3.31□□□□□ -1.88
CUP9P41817 EKI1YDR147W 1605 nt3.3□□□□□ -1.88
CUP9P41817 DBP3YGL078C 1572 nt3.3□□□□□ -1.88
CUP9P41817 YDR090CYDR090C 933 nt3.3□□□□□ -1.88
CUP9P41817 YDR271CYDR271C 372 nt3.3□□□□□ -1.88
CUP9P41817 RTA1YGR213C 954 nt3.3□□□□□ -1.88
CUP9P41817 RPB3YIL021W 957 nt3.3□□□□□ -1.88
CUP9P41817 PIR3YKL163W 978 nt3.3□□□□□ -1.88
CUP9P41817 YLR036CYLR036C 612 nt3.3□□□□□ -1.88
CUP9P41817 SWC7YLR385C 399 nt3.3□□□□□ -1.88
CUP9P41817 YOL035CYOL035C 303 nt3.3□□□□□ -1.88
CUP9P41817 REX4YOL080C 870 nt3.3□□□□□ -1.88
CUP9P41817 FAT1YBR041W 2010 nt3.3□□□□□ -1.88
CUP9P41817 ZDS1YMR273C 2748 nt3.3□□□□□ -1.88
CUP9P41817 SPT10YJL127C 1923 nt3.3□□□□□ -1.88
CUP9P41817 PMT4YJR143C 2289 nt3.3□□□□□ -1.88
CUP9P41817 CDC6YJL194W 1542 nt3.29□□□□□ -1.88
CUP9P41817 YER077CYER077C 2067 nt3.29□□□□□ -1.88
CUP9P41817 PPZ1YML016C 2079 nt3.29□□□□□ -1.88
CUP9P41817 TRK1YJL129C 3708 nt3.29□□□□□ -1.88
CUP9P41817 CLB4YLR210W 1383 nt3.29□□□□□ -1.88
CUP9P41817 KIP3YGL216W 2418 nt3.29□□□□□ -1.88
CUP9P41817 COS6YGR295C 1146 nt3.29□□□□□ -1.88
CUP9P41817 SRP40YKR092C 1221 nt3.29□□□□□ -1.88
CUP9P41817 IDI1YPL117C 867 nt3.29□□□□□ -1.88
CUP9P41817 HFD1YMR110C 1599 nt3.29□□□□□ -1.88
CUP9P41817 TYW1YPL207W 2433 nt3.29□□□□□ -1.88
CUP9P41817 RPN5YDL147W 1338 nt3.28□□□□□ -1.88
Retrieved 100 of 7,029 protein–RNA pairs in 16.2 ms