Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.34■■□□□ 1.01
HNF4AP41235 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
HNF4AP41235 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.34■■□□□ 1.01
HNF4AP41235 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.34■■□□□ 1.01
HNF4AP41235 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
HNF4AP41235 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
HNF4AP41235 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HNF4AP41235 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HNF4AP41235 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
HNF4AP41235 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.33■■□□□ 1.01
HNF4AP41235 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
HNF4AP41235 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
HNF4AP41235 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.33■■□□□ 1.01
HNF4AP41235 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HNF4AP41235 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HNF4AP41235 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1
HNF4AP41235 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.33■■□□□ 1
HNF4AP41235 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.33■■□□□ 1
HNF4AP41235 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.32■■□□□ 1
HNF4AP41235 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
HNF4AP41235 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
HNF4AP41235 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
HNF4AP41235 SRD5A1P1-201ENST00000442297 786 ntBASIC21.32■■□□□ 1
HNF4AP41235 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HNF4AP41235 AC241377.3-202ENST00000626088 1088 ntBASIC21.32■■□□□ 1
HNF4AP41235 AC241585.3-202ENST00000628937 1088 ntBASIC21.32■■□□□ 1
HNF4AP41235 AC245100.8-202ENST00000629247 1058 ntBASIC21.32■■□□□ 1
HNF4AP41235 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HNF4AP41235 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HNF4AP41235 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HNF4AP41235 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.32■■□□□ 1
HNF4AP41235 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
HNF4AP41235 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.32■■□□□ 1
HNF4AP41235 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HNF4AP41235 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.32■■□□□ 1
HNF4AP41235 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.32■■□□□ 1
HNF4AP41235 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.31■■□□□ 1
HNF4AP41235 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HNF4AP41235 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HNF4AP41235 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.31■■□□□ 1
HNF4AP41235 AL136116.3-201ENST00000402907 1138 ntBASIC21.31■■□□□ 1
HNF4AP41235 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.31■■□□□ 1
HNF4AP41235 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.31■■□□□ 1
HNF4AP41235 AC008406.3-201ENST00000620001 1374 ntBASIC21.31■■□□□ 1
HNF4AP41235 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HNF4AP41235 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
HNF4AP41235 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.31■■□□□ 1
HNF4AP41235 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HNF4AP41235 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
HNF4AP41235 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.3■■□□□ 1
HNF4AP41235 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.3■■□□□ 1
HNF4AP41235 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.3■■□□□ 1
HNF4AP41235 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HNF4AP41235 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HNF4AP41235 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HNF4AP41235 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
HNF4AP41235 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.3■■□□□ 1
HNF4AP41235 AC099791.2-201ENST00000605725 427 ntBASIC21.3■■□□□ 1
HNF4AP41235 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HNF4AP41235 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.3■■□□□ 1
HNF4AP41235 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.3■■□□□ 1
HNF4AP41235 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
HNF4AP41235 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HNF4AP41235 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HNF4AP41235 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
HNF4AP41235 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HNF4AP41235 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HNF4AP41235 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HNF4AP41235 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HNF4AP41235 AC127496.7-201ENST00000625110 1798 ntBASIC21.29■■□□□ 1
HNF4AP41235 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.29■■□□□ 1
HNF4AP41235 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
HNF4AP41235 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.29■■□□□ 1
HNF4AP41235 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
HNF4AP41235 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HNF4AP41235 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.29■■□□□ 1
HNF4AP41235 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
HNF4AP41235 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.29■■□□□ 1
HNF4AP41235 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
HNF4AP41235 GUSBP5-202ENST00000510805 1989 ntBASIC21.28■■□□□ 1
HNF4AP41235 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
HNF4AP41235 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.28■■□□□ 1
HNF4AP41235 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HNF4AP41235 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
HNF4AP41235 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
HNF4AP41235 AL499627.2-201ENST00000606283 725 ntBASIC21.28■■□□□ 1
HNF4AP41235 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HNF4AP41235 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HNF4AP41235 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
HNF4AP41235 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms