Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC26.01■■□□□ 1.75
SHMT1P34896 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC26.01■■□□□ 1.75
SHMT1P34896 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
SHMT1P34896 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC26.01■■□□□ 1.75
SHMT1P34896 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
SHMT1P34896 KRT18P5-201ENST00000436075 1291 ntBASIC26.01■■□□□ 1.75
SHMT1P34896 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
SHMT1P34896 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC26.01■■□□□ 1.75
SHMT1P34896 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC26.01■■□□□ 1.75
SHMT1P34896 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC26.01■■□□□ 1.75
SHMT1P34896 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26■■□□□ 1.75
SHMT1P34896 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SHMT1P34896 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
SHMT1P34896 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC26■■□□□ 1.75
SHMT1P34896 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC26■■□□□ 1.75
SHMT1P34896 GLI3-203ENST00000437480 451 ntTSL 2 BASIC26■■□□□ 1.75
SHMT1P34896 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC26■■□□□ 1.75
SHMT1P34896 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC26■■□□□ 1.75
SHMT1P34896 CCDC92B-201ENST00000575506 885 ntBASIC26■■□□□ 1.75
SHMT1P34896 AC105233.4-201ENST00000642045 216 ntBASIC26■■□□□ 1.75
SHMT1P34896 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC26■■□□□ 1.75
SHMT1P34896 RARA-203ENST00000394086 2008 ntTSL 2 BASIC26■■□□□ 1.75
SHMT1P34896 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC26■■□□□ 1.75
SHMT1P34896 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SHMT1P34896 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
SHMT1P34896 EI24-211ENST00000534546 1544 ntTSL 2 BASIC25.99■■□□□ 1.75
SHMT1P34896 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
SHMT1P34896 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC25.99■■□□□ 1.75
SHMT1P34896 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC25.99■■□□□ 1.75
SHMT1P34896 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC25.99■■□□□ 1.75
SHMT1P34896 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC25.99■■□□□ 1.75
SHMT1P34896 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC25.98■■□□□ 1.75
SHMT1P34896 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC25.98■■□□□ 1.75
SHMT1P34896 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.98■■□□□ 1.75
SHMT1P34896 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
SHMT1P34896 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC25.98■■□□□ 1.75
SHMT1P34896 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
SHMT1P34896 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
SHMT1P34896 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
SHMT1P34896 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC25.98■■□□□ 1.75
SHMT1P34896 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC25.98■■□□□ 1.75
SHMT1P34896 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.98■■□□□ 1.75
SHMT1P34896 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC25.98■■□□□ 1.75
SHMT1P34896 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SHMT1P34896 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC25.98■■□□□ 1.75
SHMT1P34896 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SHMT1P34896 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SHMT1P34896 ANOS2P-203ENST00000472227 1816 ntBASIC25.98■■□□□ 1.75
SHMT1P34896 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SHMT1P34896 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SHMT1P34896 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
SHMT1P34896 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC25.97■■□□□ 1.75
SHMT1P34896 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC25.97■■□□□ 1.75
SHMT1P34896 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
SHMT1P34896 TERF1P2-201ENST00000583350 1212 ntBASIC25.97■■□□□ 1.75
SHMT1P34896 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC25.97■■□□□ 1.75
SHMT1P34896 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC25.97■■□□□ 1.75
SHMT1P34896 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
SHMT1P34896 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
SHMT1P34896 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SHMT1P34896 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
SHMT1P34896 MPST-204ENST00000404393 1329 ntTSL 5 BASIC25.96■■□□□ 1.75
SHMT1P34896 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SHMT1P34896 NT5C3AP1-201ENST00000394500 1012 ntBASIC25.96■■□□□ 1.75
SHMT1P34896 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SHMT1P34896 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SHMT1P34896 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC25.96■■□□□ 1.75
SHMT1P34896 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC25.96■■□□□ 1.75
SHMT1P34896 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC25.96■■□□□ 1.75
SHMT1P34896 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.75
SHMT1P34896 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
SHMT1P34896 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC25.95■■□□□ 1.75
SHMT1P34896 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC25.95■■□□□ 1.75
SHMT1P34896 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
SHMT1P34896 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SHMT1P34896 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC25.95■■□□□ 1.74
SHMT1P34896 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SHMT1P34896 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC25.95■■□□□ 1.74
SHMT1P34896 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
SHMT1P34896 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
SHMT1P34896 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
SHMT1P34896 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
SHMT1P34896 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
SHMT1P34896 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC25.94■■□□□ 1.74
SHMT1P34896 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
SHMT1P34896 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
SHMT1P34896 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC25.94■■□□□ 1.74
SHMT1P34896 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC25.93■■□□□ 1.74
SHMT1P34896 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.93■■□□□ 1.74
SHMT1P34896 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC25.93■■□□□ 1.74
SHMT1P34896 KRT18P14-201ENST00000534205 1250 ntBASIC25.93■■□□□ 1.74
SHMT1P34896 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.93■■□□□ 1.74
SHMT1P34896 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
SHMT1P34896 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
SHMT1P34896 LINC02228-203ENST00000641970 1355 ntBASIC25.93■■□□□ 1.74
SHMT1P34896 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.92■■□□□ 1.74
SHMT1P34896 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SHMT1P34896 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
SHMT1P34896 AC092068.2-201ENST00000590491 1708 ntBASIC25.92■■□□□ 1.74
SHMT1P34896 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms