Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CIITAP33076 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CIITAP33076 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
CIITAP33076 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
CIITAP33076 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC24.98■■□□□ 1.59
CIITAP33076 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC24.98■■□□□ 1.59
CIITAP33076 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
CIITAP33076 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
CIITAP33076 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
CIITAP33076 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CIITAP33076 AP005435.1-201ENST00000529293 1178 ntBASIC24.98■■□□□ 1.59
CIITAP33076 AL031602.1-201ENST00000633169 911 ntBASIC24.98■■□□□ 1.59
CIITAP33076 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CIITAP33076 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CIITAP33076 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CIITAP33076 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CIITAP33076 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CIITAP33076 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC24.97■■□□□ 1.59
CIITAP33076 GCA-201ENST00000233612 1694 ntTSL 2 BASIC24.97■■□□□ 1.59
CIITAP33076 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC24.97■■□□□ 1.59
CIITAP33076 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
CIITAP33076 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC24.96■■□□□ 1.59
CIITAP33076 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CIITAP33076 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC24.96■■□□□ 1.59
CIITAP33076 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC24.96■■□□□ 1.59
CIITAP33076 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CIITAP33076 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC24.96■■□□□ 1.59
CIITAP33076 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC24.96■■□□□ 1.59
CIITAP33076 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC24.95■■□□□ 1.59
CIITAP33076 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC24.95■■□□□ 1.59
CIITAP33076 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC24.95■■□□□ 1.59
CIITAP33076 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.59
CIITAP33076 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC24.95■■□□□ 1.58
CIITAP33076 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC24.95■■□□□ 1.58
CIITAP33076 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC24.95■■□□□ 1.58
CIITAP33076 AC105265.2-201ENST00000467189 838 ntBASIC24.95■■□□□ 1.58
CIITAP33076 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CIITAP33076 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CIITAP33076 AC126544.1-201ENST00000580842 1059 ntBASIC24.95■■□□□ 1.58
CIITAP33076 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CIITAP33076 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
CIITAP33076 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.95■■□□□ 1.58
CIITAP33076 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
CIITAP33076 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CIITAP33076 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CIITAP33076 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CIITAP33076 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CIITAP33076 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CIITAP33076 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CIITAP33076 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
CIITAP33076 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
CIITAP33076 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CIITAP33076 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
CIITAP33076 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC24.93■■□□□ 1.58
CIITAP33076 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC24.93■■□□□ 1.58
CIITAP33076 GRAMD4P2-201ENST00000423297 1097 ntBASIC24.93■■□□□ 1.58
CIITAP33076 ZNRF2P3-201ENST00000424200 374 ntBASIC24.93■■□□□ 1.58
CIITAP33076 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
CIITAP33076 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC24.93■■□□□ 1.58
CIITAP33076 AC068587.7-201ENST00000641602 218 ntBASIC24.93■■□□□ 1.58
CIITAP33076 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CIITAP33076 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
CIITAP33076 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
CIITAP33076 STOX2-205ENST00000513034 807 ntTSL 3 BASIC24.92■■□□□ 1.58
CIITAP33076 IGHV3-19-201ENST00000521488 291 ntBASIC24.92■■□□□ 1.58
CIITAP33076 AICDA-202ENST00000537228 667 ntTSL 5 BASIC24.92■■□□□ 1.58
CIITAP33076 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC24.91■■□□□ 1.58
CIITAP33076 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC24.91■■□□□ 1.58
CIITAP33076 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC24.91■■□□□ 1.58
CIITAP33076 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CIITAP33076 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
CIITAP33076 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CIITAP33076 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC24.91■■□□□ 1.58
CIITAP33076 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC24.91■■□□□ 1.58
CIITAP33076 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
CIITAP33076 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CIITAP33076 EI24-211ENST00000534546 1544 ntTSL 2 BASIC24.91■■□□□ 1.58
CIITAP33076 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC24.9■■□□□ 1.58
CIITAP33076 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.9■■□□□ 1.58
CIITAP33076 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CIITAP33076 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CIITAP33076 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CIITAP33076 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
CIITAP33076 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CIITAP33076 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC24.9■■□□□ 1.58
CIITAP33076 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CIITAP33076 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC24.9■■□□□ 1.58
CIITAP33076 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CIITAP33076 CASK-201ENST00000378154 2494 ntTSL 5 BASIC24.9■■□□□ 1.58
CIITAP33076 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC24.9■■□□□ 1.58
CIITAP33076 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CIITAP33076 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC24.9■■□□□ 1.58
CIITAP33076 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CIITAP33076 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CIITAP33076 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC24.89■■□□□ 1.58
CIITAP33076 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC24.89■■□□□ 1.58
CIITAP33076 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC24.89■■□□□ 1.58
CIITAP33076 RBM38-205ENST00000440234 686 ntTSL 2 BASIC24.89■■□□□ 1.58
CIITAP33076 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC24.89■■□□□ 1.58
CIITAP33076 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC24.89■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms