Protein–RNA interactions for Protein: P03897

MT-ND3, NADH-ubiquinone oxidoreductase chain 3, humanhuman

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND3P03897 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC22.39■■□□□ 1.17
MT-ND3P03897 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.39■■□□□ 1.17
MT-ND3P03897 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
MT-ND3P03897 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
MT-ND3P03897 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
MT-ND3P03897 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC22.39■■□□□ 1.17
MT-ND3P03897 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
MT-ND3P03897 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
MT-ND3P03897 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.39■■□□□ 1.17
MT-ND3P03897 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.39■■□□□ 1.17
MT-ND3P03897 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.38■■□□□ 1.17
MT-ND3P03897 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.38■■□□□ 1.17
MT-ND3P03897 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.38■■□□□ 1.17
MT-ND3P03897 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MT-ND3P03897 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
MT-ND3P03897 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MT-ND3P03897 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MT-ND3P03897 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
MT-ND3P03897 AC007375.3-201ENST00000600936 2314 ntBASIC22.38■■□□□ 1.17
MT-ND3P03897 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MT-ND3P03897 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC22.38■■□□□ 1.17
MT-ND3P03897 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MT-ND3P03897 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MT-ND3P03897 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MT-ND3P03897 AL353803.4-201ENST00000565882 1934 ntBASIC22.37■■□□□ 1.17
MT-ND3P03897 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
MT-ND3P03897 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MT-ND3P03897 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MT-ND3P03897 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MT-ND3P03897 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MT-ND3P03897 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.37■■□□□ 1.17
MT-ND3P03897 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.37■■□□□ 1.17
MT-ND3P03897 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.37■■□□□ 1.17
MT-ND3P03897 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MT-ND3P03897 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.37■■□□□ 1.17
MT-ND3P03897 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
MT-ND3P03897 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
MT-ND3P03897 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MT-ND3P03897 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
MT-ND3P03897 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
MT-ND3P03897 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC22.36■■□□□ 1.17
MT-ND3P03897 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
MT-ND3P03897 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
MT-ND3P03897 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
MT-ND3P03897 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
MT-ND3P03897 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
MT-ND3P03897 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.36■■□□□ 1.17
MT-ND3P03897 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
MT-ND3P03897 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.36■■□□□ 1.17
MT-ND3P03897 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
MT-ND3P03897 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
MT-ND3P03897 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.36■■□□□ 1.17
MT-ND3P03897 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.36■■□□□ 1.17
MT-ND3P03897 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
MT-ND3P03897 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC22.36■■□□□ 1.17
MT-ND3P03897 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC22.36■■□□□ 1.17
MT-ND3P03897 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MT-ND3P03897 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MT-ND3P03897 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MT-ND3P03897 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MT-ND3P03897 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.35■■□□□ 1.17
MT-ND3P03897 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
MT-ND3P03897 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
MT-ND3P03897 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.35■■□□□ 1.17
MT-ND3P03897 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.35■■□□□ 1.17
MT-ND3P03897 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC22.35■■□□□ 1.17
MT-ND3P03897 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
MT-ND3P03897 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MT-ND3P03897 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
MT-ND3P03897 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC22.35■■□□□ 1.17
MT-ND3P03897 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
MT-ND3P03897 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.34■■□□□ 1.17
MT-ND3P03897 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
MT-ND3P03897 AC019069.1-201ENST00000610008 1333 ntBASIC22.34■■□□□ 1.17
MT-ND3P03897 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.34■■□□□ 1.17
MT-ND3P03897 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC22.34■■□□□ 1.17
MT-ND3P03897 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MT-ND3P03897 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MT-ND3P03897 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
MT-ND3P03897 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
MT-ND3P03897 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
MT-ND3P03897 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
MT-ND3P03897 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.34■■□□□ 1.17
MT-ND3P03897 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.34■■□□□ 1.17
MT-ND3P03897 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.34■■□□□ 1.17
MT-ND3P03897 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.33■■□□□ 1.17
MT-ND3P03897 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.33■■□□□ 1.17
MT-ND3P03897 AC092053.2-201ENST00000640557 1818 ntBASIC22.33■■□□□ 1.16
MT-ND3P03897 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.16
MT-ND3P03897 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.32■■□□□ 1.16
MT-ND3P03897 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.32■■□□□ 1.16
MT-ND3P03897 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MT-ND3P03897 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC22.32■■□□□ 1.16
MT-ND3P03897 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.32■■□□□ 1.16
MT-ND3P03897 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MT-ND3P03897 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
MT-ND3P03897 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
MT-ND3P03897 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
MT-ND3P03897 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MT-ND3P03897 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms