Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
CDKL5O76039 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CDKL5O76039 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.66■■□□□ 1.7
CDKL5O76039 pRNA.6-201ENST00000610482 90 ntBASIC25.66■■□□□ 1.7
CDKL5O76039 pRNA.5-201ENST00000612139 90 ntBASIC25.66■■□□□ 1.7
CDKL5O76039 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.66■■□□□ 1.7
CDKL5O76039 pRNA.11-201ENST00000618423 90 ntBASIC25.66■■□□□ 1.7
CDKL5O76039 pRNA.13-201ENST00000619112 90 ntBASIC25.66■■□□□ 1.7
CDKL5O76039 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CDKL5O76039 AL117328.2-201ENST00000624617 1940 ntBASIC25.66■■□□□ 1.7
CDKL5O76039 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
CDKL5O76039 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CDKL5O76039 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CDKL5O76039 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CDKL5O76039 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CDKL5O76039 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CDKL5O76039 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CDKL5O76039 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.65■■□□□ 1.7
CDKL5O76039 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CDKL5O76039 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
CDKL5O76039 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC25.65■■□□□ 1.7
CDKL5O76039 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
CDKL5O76039 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CDKL5O76039 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC25.64■■□□□ 1.7
CDKL5O76039 AC127496.7-201ENST00000625110 1798 ntBASIC25.64■■□□□ 1.7
CDKL5O76039 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
CDKL5O76039 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CDKL5O76039 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CDKL5O76039 AC131281.2-201ENST00000520478 145 ntBASIC25.64■■□□□ 1.7
CDKL5O76039 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.7
CDKL5O76039 MIR4466-201ENST00000606121 54 ntBASIC25.64■■□□□ 1.7
CDKL5O76039 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.64■■□□□ 1.7
CDKL5O76039 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC25.64■■□□□ 1.7
CDKL5O76039 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CDKL5O76039 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
CDKL5O76039 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CDKL5O76039 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC25.64■■□□□ 1.69
CDKL5O76039 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CDKL5O76039 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDKL5O76039 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC25.63■■□□□ 1.69
CDKL5O76039 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDKL5O76039 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDKL5O76039 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDKL5O76039 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDKL5O76039 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC25.63■■□□□ 1.69
CDKL5O76039 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
CDKL5O76039 LINC01960-201ENST00000563759 1884 ntBASIC25.63■■□□□ 1.69
CDKL5O76039 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CDKL5O76039 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDKL5O76039 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CDKL5O76039 AC133637.1-201ENST00000624115 1537 ntBASIC25.63■■□□□ 1.69
CDKL5O76039 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CDKL5O76039 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CDKL5O76039 GUSBP5-202ENST00000510805 1989 ntBASIC25.62■■□□□ 1.69
CDKL5O76039 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
CDKL5O76039 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CDKL5O76039 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC25.62■■□□□ 1.69
CDKL5O76039 AC087742.1-201ENST00000575880 1738 ntBASIC25.61■■□□□ 1.69
CDKL5O76039 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
CDKL5O76039 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CDKL5O76039 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC25.61■■□□□ 1.69
CDKL5O76039 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
CDKL5O76039 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC25.6■■□□□ 1.69
CDKL5O76039 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CDKL5O76039 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
CDKL5O76039 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC25.6■■□□□ 1.69
CDKL5O76039 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CDKL5O76039 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CDKL5O76039 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.6■■□□□ 1.69
CDKL5O76039 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CDKL5O76039 MIR3181-201ENST00000578512 73 ntBASIC25.6■■□□□ 1.69
CDKL5O76039 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.6■■□□□ 1.69
CDKL5O76039 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
CDKL5O76039 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
CDKL5O76039 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CDKL5O76039 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC25.6■■□□□ 1.69
CDKL5O76039 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC25.59■■□□□ 1.69
CDKL5O76039 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC25.59■■□□□ 1.69
CDKL5O76039 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.59■■□□□ 1.69
CDKL5O76039 DUX4L19-201ENST00000557448 1267 ntBASIC25.59■■□□□ 1.69
CDKL5O76039 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.59■■□□□ 1.69
CDKL5O76039 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
CDKL5O76039 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CDKL5O76039 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CDKL5O76039 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CDKL5O76039 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
CDKL5O76039 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CDKL5O76039 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC25.58■■□□□ 1.69
CDKL5O76039 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CDKL5O76039 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
CDKL5O76039 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CDKL5O76039 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CDKL5O76039 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CDKL5O76039 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CDKL5O76039 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CDKL5O76039 AC131212.1-201ENST00000613771 668 ntBASIC25.57■■□□□ 1.68
CDKL5O76039 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CDKL5O76039 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
CDKL5O76039 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC25.57■■□□□ 1.68
CDKL5O76039 TERT-206ENST00000508104 2486 ntTSL 5 BASIC25.57■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms