Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC24.91■■□□□ 1.58
MSH4O15457 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
MSH4O15457 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
MSH4O15457 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC24.9■■□□□ 1.58
MSH4O15457 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC24.9■■□□□ 1.58
MSH4O15457 ZNRF2P3-201ENST00000424200 374 ntBASIC24.9■■□□□ 1.58
MSH4O15457 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
MSH4O15457 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC24.9■■□□□ 1.58
MSH4O15457 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
MSH4O15457 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.58
MSH4O15457 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
MSH4O15457 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
MSH4O15457 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC24.89■■□□□ 1.58
MSH4O15457 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC24.89■■□□□ 1.58
MSH4O15457 AC126544.1-201ENST00000580842 1059 ntBASIC24.89■■□□□ 1.58
MSH4O15457 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
MSH4O15457 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.57
MSH4O15457 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC24.89■■□□□ 1.57
MSH4O15457 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC24.89■■□□□ 1.57
MSH4O15457 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
MSH4O15457 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH4O15457 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH4O15457 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH4O15457 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
MSH4O15457 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC24.88■■□□□ 1.57
MSH4O15457 GRAMD4P2-201ENST00000423297 1097 ntBASIC24.88■■□□□ 1.57
MSH4O15457 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC24.88■■□□□ 1.57
MSH4O15457 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC24.88■■□□□ 1.57
MSH4O15457 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
MSH4O15457 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH4O15457 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
MSH4O15457 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
MSH4O15457 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
MSH4O15457 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
MSH4O15457 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
MSH4O15457 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
MSH4O15457 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
MSH4O15457 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC24.87■■□□□ 1.57
MSH4O15457 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC24.87■■□□□ 1.57
MSH4O15457 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC24.87■■□□□ 1.57
MSH4O15457 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC24.87■■□□□ 1.57
MSH4O15457 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC24.87■■□□□ 1.57
MSH4O15457 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC24.87■■□□□ 1.57
MSH4O15457 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
MSH4O15457 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
MSH4O15457 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
MSH4O15457 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
MSH4O15457 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
MSH4O15457 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC24.86■■□□□ 1.57
MSH4O15457 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC24.86■■□□□ 1.57
MSH4O15457 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
MSH4O15457 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC24.86■■□□□ 1.57
MSH4O15457 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
MSH4O15457 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
MSH4O15457 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC24.85■■□□□ 1.57
MSH4O15457 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
MSH4O15457 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC24.85■■□□□ 1.57
MSH4O15457 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC24.85■■□□□ 1.57
MSH4O15457 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
MSH4O15457 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC24.85■■□□□ 1.57
MSH4O15457 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC24.85■■□□□ 1.57
MSH4O15457 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC24.85■■□□□ 1.57
MSH4O15457 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
MSH4O15457 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.84■■□□□ 1.57
MSH4O15457 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
MSH4O15457 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
MSH4O15457 AL031602.1-201ENST00000633169 911 ntBASIC24.84■■□□□ 1.57
MSH4O15457 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
MSH4O15457 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
MSH4O15457 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC24.84■■□□□ 1.57
MSH4O15457 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH4O15457 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC24.83■■□□□ 1.57
MSH4O15457 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC24.83■■□□□ 1.57
MSH4O15457 EI24-211ENST00000534546 1544 ntTSL 2 BASIC24.83■■□□□ 1.57
MSH4O15457 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC24.83■■□□□ 1.57
MSH4O15457 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
MSH4O15457 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC24.83■■□□□ 1.57
MSH4O15457 AP005435.1-201ENST00000529293 1178 ntBASIC24.83■■□□□ 1.57
MSH4O15457 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
MSH4O15457 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC24.83■■□□□ 1.56
MSH4O15457 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC24.83■■□□□ 1.56
MSH4O15457 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC24.82■■□□□ 1.56
MSH4O15457 GCA-201ENST00000233612 1694 ntTSL 2 BASIC24.82■■□□□ 1.56
MSH4O15457 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH4O15457 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.82■■□□□ 1.56
MSH4O15457 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
MSH4O15457 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH4O15457 IGHV3-19-201ENST00000521488 291 ntBASIC24.82■■□□□ 1.56
MSH4O15457 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC24.82■■□□□ 1.56
MSH4O15457 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
MSH4O15457 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC24.82■■□□□ 1.56
MSH4O15457 TSPY26P-201ENST00000476365 1326 ntBASIC24.82■■□□□ 1.56
MSH4O15457 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH4O15457 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC24.81■■□□□ 1.56
MSH4O15457 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH4O15457 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC24.81■■□□□ 1.56
MSH4O15457 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC24.81■■□□□ 1.56
MSH4O15457 RBM38-205ENST00000440234 686 ntTSL 2 BASIC24.81■■□□□ 1.56
MSH4O15457 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC24.81■■□□□ 1.56
MSH4O15457 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms