Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A5A8TX70 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A5A8TX70 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A5A8TX70 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A5A8TX70 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A5A8TX70 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A5A8TX70 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A5A8TX70 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A5A8TX70 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A5A8TX70 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.46■□□□□ 0.39
COL6A5A8TX70 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A5A8TX70 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC17.46■□□□□ 0.39
COL6A5A8TX70 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A5A8TX70 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
COL6A5A8TX70 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
COL6A5A8TX70 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A5A8TX70 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.46■□□□□ 0.39
COL6A5A8TX70 RARRES2P4-201ENST00000514074 484 ntBASIC17.46■□□□□ 0.39
COL6A5A8TX70 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A5A8TX70 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A5A8TX70 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A5A8TX70 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A5A8TX70 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.45■□□□□ 0.38
COL6A5A8TX70 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A5A8TX70 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A5A8TX70 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A5A8TX70 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
COL6A5A8TX70 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A5A8TX70 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A5A8TX70 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.44■□□□□ 0.38
COL6A5A8TX70 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A5A8TX70 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A5A8TX70 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A5A8TX70 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A5A8TX70 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.43■□□□□ 0.38
COL6A5A8TX70 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A5A8TX70 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A5A8TX70 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
COL6A5A8TX70 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL6A5A8TX70 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
COL6A5A8TX70 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.42■□□□□ 0.38
COL6A5A8TX70 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.42■□□□□ 0.38
COL6A5A8TX70 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.42■□□□□ 0.38
COL6A5A8TX70 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC17.42■□□□□ 0.38
COL6A5A8TX70 ERN1-208ENST00000606895 2068 ntBASIC17.42■□□□□ 0.38
COL6A5A8TX70 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A5A8TX70 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A5A8TX70 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC17.42■□□□□ 0.38
COL6A5A8TX70 MIR4497-201ENST00000583208 89 ntBASIC17.42■□□□□ 0.38
COL6A5A8TX70 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A5A8TX70 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
COL6A5A8TX70 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A5A8TX70 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A5A8TX70 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A5A8TX70 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A5A8TX70 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A5A8TX70 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A5A8TX70 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
COL6A5A8TX70 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A5A8TX70 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.41■□□□□ 0.38
COL6A5A8TX70 UNC93B5-201ENST00000530315 699 ntBASIC17.41■□□□□ 0.38
COL6A5A8TX70 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A5A8TX70 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A5A8TX70 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
COL6A5A8TX70 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A5A8TX70 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A5A8TX70 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A5A8TX70 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A5A8TX70 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A5A8TX70 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A5A8TX70 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A5A8TX70 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
COL6A5A8TX70 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A5A8TX70 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.4■□□□□ 0.38
COL6A5A8TX70 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.4■□□□□ 0.38
COL6A5A8TX70 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A5A8TX70 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A5A8TX70 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
COL6A5A8TX70 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A5A8TX70 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A5A8TX70 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A5A8TX70 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A5A8TX70 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A5A8TX70 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
COL6A5A8TX70 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.39■□□□□ 0.38
COL6A5A8TX70 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A5A8TX70 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.39■□□□□ 0.37
COL6A5A8TX70 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.39■□□□□ 0.37
COL6A5A8TX70 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms