Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 AL139158.3-201ENST00000641212 1562 ntBASIC12.93□□□□□ -0.34
COL28A1Q2UY09 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL28A1Q2UY09 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 SNORD88B-201ENST00000408454 91 ntBASIC12.92□□□□□ -0.34
COL28A1Q2UY09 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 AC000077.1-201ENST00000420012 953 ntBASIC12.92□□□□□ -0.34
COL28A1Q2UY09 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 AC092810.2-201ENST00000431570 362 ntBASIC12.92□□□□□ -0.34
COL28A1Q2UY09 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 AC092865.2-201ENST00000439409 971 ntBASIC12.92□□□□□ -0.34
COL28A1Q2UY09 AF186996.6-201ENST00000485294 149 ntBASIC12.92□□□□□ -0.34
COL28A1Q2UY09 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 OR52V1P-201ENST00000515557 898 ntBASIC12.92□□□□□ -0.34
COL28A1Q2UY09 ABCD1P3-201ENST00000562927 605 ntBASIC12.92□□□□□ -0.34
COL28A1Q2UY09 PCTP-206ENST00000573500 919 ntTSL 3 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 CD22-209ENST00000594250 2107 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 AC097474.1-201ENST00000506481 1371 ntBASIC12.92□□□□□ -0.34
COL28A1Q2UY09 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL28A1Q2UY09 GUCY2EP-203ENST00000531117 1918 ntBASIC12.92□□□□□ -0.34
COL28A1Q2UY09 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 RCC2P1-201ENST00000452257 1476 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 AC061965.1-201ENST00000560524 1465 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 MIR193BHG-211ENST00000641433 5365 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 DUT-208ENST00000559540 1441 ntTSL 2 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 PPP1R2P10-201ENST00000393023 595 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 DNM1P46-202ENST00000415963 882 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 AC079325.1-201ENST00000430386 857 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 CA5BP1-205ENST00000435806 1064 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 AK2P2-201ENST00000439142 405 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 UGT1A12P-201ENST00000447084 853 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 AC112250.1-201ENST00000504640 745 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 AL592146.2-201ENST00000565388 444 ntTSL 5 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 AC239600.1-201ENST00000603201 462 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms