Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CBR4-202ENST00000504480 1602 ntTSL 2 BASIC15.25■□□□□ 0.03
SMARCA1P28370 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC15.24■□□□□ 0.03
SMARCA1P28370 LILRP2-202ENST00000413572 1383 ntBASIC15.24■□□□□ 0.03
SMARCA1P28370 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC15.24■□□□□ 0.03
SMARCA1P28370 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 OAS1-201ENST00000202917 1816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 TTN-AS1-209ENST00000456053 2033 ntTSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 AHCYP7-201ENST00000560847 1308 ntBASIC15.24■□□□□ 0.03
SMARCA1P28370 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC15.24■□□□□ 0.03
SMARCA1P28370 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC15.24■□□□□ 0.03
SMARCA1P28370 AC024475.2-201ENST00000312173 879 ntBASIC15.24■□□□□ 0.03
SMARCA1P28370 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 COX20P1-201ENST00000366529 357 ntBASIC15.24■□□□□ 0.03
SMARCA1P28370 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 AC092570.1-201ENST00000414446 469 ntBASIC15.24■□□□□ 0.03
SMARCA1P28370 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC15.24■□□□□ 0.03
SMARCA1P28370 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 AL929302.1-201ENST00000426556 871 ntBASIC15.24■□□□□ 0.03
SMARCA1P28370 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 CISD2-202ENST00000503643 808 ntTSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC15.24■□□□□ 0.03
SMARCA1P28370 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC15.24■□□□□ 0.03
SMARCA1P28370 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC15.24■□□□□ 0.03
SMARCA1P28370 AC008622.3-201ENST00000621170 600 ntBASIC15.24■□□□□ 0.03
SMARCA1P28370 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC15.24■□□□□ 0.03
SMARCA1P28370 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 LINC00563-201ENST00000566370 1400 ntBASIC15.24■□□□□ 0.03
SMARCA1P28370 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC15.24■□□□□ 0.03
SMARCA1P28370 TRIML2-207ENST00000512729 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 ZSCAN32-203ENST00000396852 3169 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC15.24■□□□□ 0.03
SMARCA1P28370 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SMARCA1P28370 RABL2B-203ENST00000395591 1987 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SMARCA1P28370 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC15.24■□□□□ 0.03
SMARCA1P28370 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SMARCA1P28370 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SMARCA1P28370 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SMARCA1P28370 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 LILRA6-203ENST00000396365 1890 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 ZSCAN5C-202ENST00000534327 1892 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SMARCA1P28370 TRIM39-RPP21-201ENST00000623385 1698 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SMARCA1P28370 ZCWPW1-208ENST00000490721 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 RBM10-206ENST00000628161 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 HYLS1-201ENST00000356438 1810 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SMARCA1P28370 MYL3-201ENST00000292327 924 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
SMARCA1P28370 HDGF-202ENST00000368206 960 ntTSL 5 BASIC15.23■□□□□ 0.03
SMARCA1P28370 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC15.23■□□□□ 0.03
SMARCA1P28370 MARCKSL1P2-201ENST00000401037 976 ntBASIC15.23■□□□□ 0.03
SMARCA1P28370 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 AL356000.1-201ENST00000441073 1238 ntBASIC15.23■□□□□ 0.03
SMARCA1P28370 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC15.23■□□□□ 0.03
SMARCA1P28370 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC15.23■□□□□ 0.03
SMARCA1P28370 AC244197.1-201ENST00000456494 951 ntBASIC15.23■□□□□ 0.03
SMARCA1P28370 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 RPSAP67-201ENST00000584105 862 ntBASIC15.23■□□□□ 0.03
SMARCA1P28370 AC073254.1-209ENST00000604677 631 ntTSL 5 BASIC15.23■□□□□ 0.03
SMARCA1P28370 MME-218ENST00000625667 363 ntTSL 5 BASIC15.23■□□□□ 0.03
SMARCA1P28370 PLS3-210ENST00000626746 216 ntTSL 4 BASIC15.23■□□□□ 0.03
SMARCA1P28370 AC009093.9-201ENST00000566038 1611 ntBASIC15.23■□□□□ 0.03
SMARCA1P28370 ATL2-201ENST00000378954 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 AC136604.2-201ENST00000500262 1966 ntTSL 2 BASIC15.23■□□□□ 0.03
SMARCA1P28370 VRK3-205ENST00000593919 1979 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SMARCA1P28370 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC15.23■□□□□ 0.03
SMARCA1P28370 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC15.23■□□□□ 0.03
SMARCA1P28370 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SMARCA1P28370 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SMARCA1P28370 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC15.23■□□□□ 0.03
SMARCA1P28370 KIZ-208ENST00000616848 1875 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
SMARCA1P28370 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms