Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.69■■□□□ 1.06
PCDHGA4Q9Y5G9 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHGA4Q9Y5G9 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
PCDHGA4Q9Y5G9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
PCDHGA4Q9Y5G9 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PCDHGA4Q9Y5G9 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHGA4Q9Y5G9 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.69■■□□□ 1.06
PCDHGA4Q9Y5G9 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA4Q9Y5G9 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.68■■□□□ 1.06
PCDHGA4Q9Y5G9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA4Q9Y5G9 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA4Q9Y5G9 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA4Q9Y5G9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA4Q9Y5G9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA4Q9Y5G9 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA4Q9Y5G9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA4Q9Y5G9 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA4Q9Y5G9 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA4Q9Y5G9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 SYT6-210ENST00000641643 1587 ntBASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
PCDHGA4Q9Y5G9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PCDHGA4Q9Y5G9 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDHGA4Q9Y5G9 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHGA4Q9Y5G9 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
PCDHGA4Q9Y5G9 MIR4767-201ENST00000582827 78 ntBASIC21.66■■□□□ 1.06
PCDHGA4Q9Y5G9 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDHGA4Q9Y5G9 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
PCDHGA4Q9Y5G9 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHGA4Q9Y5G9 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHGA4Q9Y5G9 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA4Q9Y5G9 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.65■■□□□ 1.06
PCDHGA4Q9Y5G9 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.65■■□□□ 1.06
PCDHGA4Q9Y5G9 AC087623.3-201ENST00000607047 1098 ntBASIC21.65■■□□□ 1.06
PCDHGA4Q9Y5G9 AC092171.4-201ENST00000609130 632 ntBASIC21.65■■□□□ 1.06
PCDHGA4Q9Y5G9 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA4Q9Y5G9 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA4Q9Y5G9 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
PCDHGA4Q9Y5G9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA4Q9Y5G9 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA4Q9Y5G9 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.64■■□□□ 1.06
PCDHGA4Q9Y5G9 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDHGA4Q9Y5G9 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.64■■□□□ 1.06
PCDHGA4Q9Y5G9 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA4Q9Y5G9 AL162430.1-201ENST00000480705 870 ntBASIC21.64■■□□□ 1.05
PCDHGA4Q9Y5G9 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA4Q9Y5G9 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA4Q9Y5G9 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA4Q9Y5G9 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA4Q9Y5G9 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA4Q9Y5G9 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA4Q9Y5G9 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA4Q9Y5G9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHGA4Q9Y5G9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHGA4Q9Y5G9 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHGA4Q9Y5G9 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHGA4Q9Y5G9 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA4Q9Y5G9 CA15P2-201ENST00000611168 834 ntBASIC21.63■■□□□ 1.05
PCDHGA4Q9Y5G9 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA4Q9Y5G9 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA4Q9Y5G9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
PCDHGA4Q9Y5G9 RASA4CP-201ENST00000424092 1398 ntBASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
PCDHGA4Q9Y5G9 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms