Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LSM4Q9Y4Z0 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LSM4Q9Y4Z0 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.68■□□□□ 0.42
LSM4Q9Y4Z0 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LSM4Q9Y4Z0 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LSM4Q9Y4Z0 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LSM4Q9Y4Z0 AC131281.2-201ENST00000520478 145 ntBASIC17.68■□□□□ 0.42
LSM4Q9Y4Z0 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LSM4Q9Y4Z0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC17.68■□□□□ 0.42
LSM4Q9Y4Z0 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LSM4Q9Y4Z0 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LSM4Q9Y4Z0 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 RPP21-222ENST00000433076 577 ntTSL 2 BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 MIR4281-201ENST00000580852 62 ntBASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 AC079630.1-202ENST00000618127 1840 ntBASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
LSM4Q9Y4Z0 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 NALT1-201ENST00000429224 738 ntTSL 5 BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 AC007375.3-201ENST00000600936 2314 ntBASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
LSM4Q9Y4Z0 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.65■□□□□ 0.42
LSM4Q9Y4Z0 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
LSM4Q9Y4Z0 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 RALB-208ENST00000631312 311 ntTSL 5 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LSM4Q9Y4Z0 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 AC139530.1-201ENST00000575312 1977 ntBASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 AC010997.5-201ENST00000609182 354 ntBASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms