Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.56■□□□□ 0.88
USE1Q9NZ43 AC026310.3-201ENST00000625186 2373 ntBASIC20.56■□□□□ 0.88
USE1Q9NZ43 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USE1Q9NZ43 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.56■□□□□ 0.88
USE1Q9NZ43 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
USE1Q9NZ43 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
USE1Q9NZ43 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USE1Q9NZ43 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.56■□□□□ 0.88
USE1Q9NZ43 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USE1Q9NZ43 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USE1Q9NZ43 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
USE1Q9NZ43 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USE1Q9NZ43 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USE1Q9NZ43 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USE1Q9NZ43 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USE1Q9NZ43 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.55■□□□□ 0.88
USE1Q9NZ43 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USE1Q9NZ43 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USE1Q9NZ43 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.55■□□□□ 0.88
USE1Q9NZ43 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USE1Q9NZ43 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USE1Q9NZ43 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USE1Q9NZ43 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.55■□□□□ 0.88
USE1Q9NZ43 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USE1Q9NZ43 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
USE1Q9NZ43 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USE1Q9NZ43 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
USE1Q9NZ43 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
USE1Q9NZ43 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USE1Q9NZ43 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USE1Q9NZ43 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USE1Q9NZ43 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
USE1Q9NZ43 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.53■□□□□ 0.88
USE1Q9NZ43 SLC25A24-204ENST00000569674 2357 ntBASIC20.53■□□□□ 0.88
USE1Q9NZ43 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.53■□□□□ 0.88
USE1Q9NZ43 AC087742.1-201ENST00000575880 1738 ntBASIC20.53■□□□□ 0.88
USE1Q9NZ43 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USE1Q9NZ43 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USE1Q9NZ43 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USE1Q9NZ43 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.53■□□□□ 0.88
USE1Q9NZ43 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
USE1Q9NZ43 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USE1Q9NZ43 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USE1Q9NZ43 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USE1Q9NZ43 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USE1Q9NZ43 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USE1Q9NZ43 AL353803.4-201ENST00000565882 1934 ntBASIC20.53■□□□□ 0.88
USE1Q9NZ43 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.53■□□□□ 0.88
USE1Q9NZ43 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USE1Q9NZ43 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USE1Q9NZ43 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USE1Q9NZ43 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.52■□□□□ 0.88
USE1Q9NZ43 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USE1Q9NZ43 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USE1Q9NZ43 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USE1Q9NZ43 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
USE1Q9NZ43 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USE1Q9NZ43 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
USE1Q9NZ43 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USE1Q9NZ43 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USE1Q9NZ43 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
USE1Q9NZ43 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.51■□□□□ 0.87
USE1Q9NZ43 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.51■□□□□ 0.87
USE1Q9NZ43 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
USE1Q9NZ43 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USE1Q9NZ43 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USE1Q9NZ43 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USE1Q9NZ43 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USE1Q9NZ43 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.51■□□□□ 0.87
USE1Q9NZ43 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USE1Q9NZ43 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USE1Q9NZ43 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USE1Q9NZ43 AC009831.1-201ENST00000580420 1582 ntBASIC20.51■□□□□ 0.87
USE1Q9NZ43 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USE1Q9NZ43 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.5■□□□□ 0.87
USE1Q9NZ43 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USE1Q9NZ43 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.5■□□□□ 0.87
USE1Q9NZ43 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USE1Q9NZ43 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USE1Q9NZ43 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USE1Q9NZ43 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USE1Q9NZ43 AC087393.1-201ENST00000582896 145 ntBASIC20.5■□□□□ 0.87
USE1Q9NZ43 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.5■□□□□ 0.87
USE1Q9NZ43 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.5■□□□□ 0.87
USE1Q9NZ43 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.5■□□□□ 0.87
USE1Q9NZ43 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USE1Q9NZ43 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.49■□□□□ 0.87
USE1Q9NZ43 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USE1Q9NZ43 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USE1Q9NZ43 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USE1Q9NZ43 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USE1Q9NZ43 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
USE1Q9NZ43 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
USE1Q9NZ43 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.49■□□□□ 0.87
USE1Q9NZ43 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USE1Q9NZ43 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
USE1Q9NZ43 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USE1Q9NZ43 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USE1Q9NZ43 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USE1Q9NZ43 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms