Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCX3AQ9NNX9 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.65■□□□□ 0.9
VCX3AQ9NNX9 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
VCX3AQ9NNX9 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
VCX3AQ9NNX9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VCX3AQ9NNX9 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCX3AQ9NNX9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCX3AQ9NNX9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VCX3AQ9NNX9 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
VCX3AQ9NNX9 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VCX3AQ9NNX9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VCX3AQ9NNX9 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VCX3AQ9NNX9 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.64■□□□□ 0.89
VCX3AQ9NNX9 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VCX3AQ9NNX9 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCX3AQ9NNX9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCX3AQ9NNX9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCX3AQ9NNX9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCX3AQ9NNX9 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
VCX3AQ9NNX9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCX3AQ9NNX9 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
VCX3AQ9NNX9 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 AC138932.1-201ENST00000534164 6830 ntBASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCX3AQ9NNX9 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
VCX3AQ9NNX9 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.62■□□□□ 0.89
VCX3AQ9NNX9 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.62■□□□□ 0.89
VCX3AQ9NNX9 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCX3AQ9NNX9 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCX3AQ9NNX9 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCX3AQ9NNX9 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCX3AQ9NNX9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCX3AQ9NNX9 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCX3AQ9NNX9 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 MIR3665-201ENST00000578708 105 ntBASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.61■□□□□ 0.89
VCX3AQ9NNX9 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VCX3AQ9NNX9 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
VCX3AQ9NNX9 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCX3AQ9NNX9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.59■□□□□ 0.89
VCX3AQ9NNX9 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCX3AQ9NNX9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
VCX3AQ9NNX9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCX3AQ9NNX9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.58■□□□□ 0.89
VCX3AQ9NNX9 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
VCX3AQ9NNX9 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
VCX3AQ9NNX9 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
VCX3AQ9NNX9 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VCX3AQ9NNX9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.58■□□□□ 0.89
VCX3AQ9NNX9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
VCX3AQ9NNX9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
VCX3AQ9NNX9 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VCX3AQ9NNX9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.58■□□□□ 0.89
VCX3AQ9NNX9 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC20.58■□□□□ 0.89
VCX3AQ9NNX9 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.58■□□□□ 0.88
VCX3AQ9NNX9 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCX3AQ9NNX9 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.57■□□□□ 0.88
VCX3AQ9NNX9 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.57■□□□□ 0.88
VCX3AQ9NNX9 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCX3AQ9NNX9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCX3AQ9NNX9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
VCX3AQ9NNX9 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.57■□□□□ 0.88
VCX3AQ9NNX9 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VCX3AQ9NNX9 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCX3AQ9NNX9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCX3AQ9NNX9 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.56■□□□□ 0.88
VCX3AQ9NNX9 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VCX3AQ9NNX9 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
VCX3AQ9NNX9 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VCX3AQ9NNX9 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms