Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRIM39Q9HCM9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRIM39Q9HCM9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.93■■□□□ 1.1
TRIM39Q9HCM9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRIM39Q9HCM9 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
TRIM39Q9HCM9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.93■■□□□ 1.1
TRIM39Q9HCM9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.93■■□□□ 1.1
TRIM39Q9HCM9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.93■■□□□ 1.1
TRIM39Q9HCM9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
TRIM39Q9HCM9 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TRIM39Q9HCM9 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 AC142381.2-201ENST00000566120 298 ntBASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 AL136967.2-201ENST00000623968 743 ntBASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.91■■□□□ 1.1
TRIM39Q9HCM9 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM39Q9HCM9 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM39Q9HCM9 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM39Q9HCM9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM39Q9HCM9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.9■■□□□ 1.1
TRIM39Q9HCM9 AP001330.3-201ENST00000520123 633 ntBASIC21.9■■□□□ 1.1
TRIM39Q9HCM9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM39Q9HCM9 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
TRIM39Q9HCM9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM39Q9HCM9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM39Q9HCM9 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.1
TRIM39Q9HCM9 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TRIM39Q9HCM9 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.89■■□□□ 1.1
TRIM39Q9HCM9 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TRIM39Q9HCM9 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
TRIM39Q9HCM9 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM39Q9HCM9 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.89■■□□□ 1.09
TRIM39Q9HCM9 MIR939-201ENST00000401314 82 ntBASIC21.89■■□□□ 1.09
TRIM39Q9HCM9 BX842568.3-201ENST00000418104 571 ntBASIC21.89■■□□□ 1.09
TRIM39Q9HCM9 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
TRIM39Q9HCM9 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM39Q9HCM9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
TRIM39Q9HCM9 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 AF213884.3-201ENST00000563833 479 ntBASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 AC233992.3-201ENST00000607491 485 ntBASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.88■■□□□ 1.09
TRIM39Q9HCM9 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 AC019069.1-201ENST00000610008 1333 ntBASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 AC008764.7-201ENST00000593779 1081 ntBASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 DUSP8P3-201ENST00000399571 1760 ntBASIC21.87■■□□□ 1.09
TRIM39Q9HCM9 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
TRIM39Q9HCM9 OR2I1P-207ENST00000453522 948 ntBASIC21.86■■□□□ 1.09
TRIM39Q9HCM9 AC091305.1-201ENST00000479476 895 ntBASIC21.86■■□□□ 1.09
TRIM39Q9HCM9 AC027682.1-201ENST00000562846 899 ntBASIC21.86■■□□□ 1.09
TRIM39Q9HCM9 AC004687.1-201ENST00000579003 1625 ntBASIC21.86■■□□□ 1.09
TRIM39Q9HCM9 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM39Q9HCM9 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM39Q9HCM9 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM39Q9HCM9 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms