Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC23.63■■□□□ 1.37
CDX2Q99626 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC23.63■■□□□ 1.37
CDX2Q99626 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CDX2Q99626 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.62■■□□□ 1.37
CDX2Q99626 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CDX2Q99626 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CDX2Q99626 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC23.62■■□□□ 1.37
CDX2Q99626 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.62■■□□□ 1.37
CDX2Q99626 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC23.62■■□□□ 1.37
CDX2Q99626 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CDX2Q99626 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
CDX2Q99626 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC23.62■■□□□ 1.37
CDX2Q99626 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CDX2Q99626 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
CDX2Q99626 BAALC-201ENST00000297574 801 ntTSL 3 BASIC23.61■■□□□ 1.37
CDX2Q99626 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CDX2Q99626 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CDX2Q99626 AL158047.1-201ENST00000445918 881 ntBASIC23.61■■□□□ 1.37
CDX2Q99626 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.61■■□□□ 1.37
CDX2Q99626 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC23.61■■□□□ 1.37
CDX2Q99626 AC079140.4-201ENST00000507448 529 ntBASIC23.61■■□□□ 1.37
CDX2Q99626 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.61■■□□□ 1.37
CDX2Q99626 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CDX2Q99626 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
CDX2Q99626 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CDX2Q99626 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CDX2Q99626 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
CDX2Q99626 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
CDX2Q99626 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
CDX2Q99626 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.6■■□□□ 1.37
CDX2Q99626 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
CDX2Q99626 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CDX2Q99626 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.6■■□□□ 1.37
CDX2Q99626 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CDX2Q99626 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CDX2Q99626 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC23.6■■□□□ 1.37
CDX2Q99626 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CDX2Q99626 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.59■■□□□ 1.37
CDX2Q99626 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CDX2Q99626 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC23.59■■□□□ 1.37
CDX2Q99626 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.59■■□□□ 1.37
CDX2Q99626 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC23.59■■□□□ 1.37
CDX2Q99626 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.59■■□□□ 1.37
CDX2Q99626 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.59■■□□□ 1.37
CDX2Q99626 STX4-202ENST00000394998 1498 ntTSL 2 BASIC23.59■■□□□ 1.37
CDX2Q99626 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC23.59■■□□□ 1.37
CDX2Q99626 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.59■■□□□ 1.37
CDX2Q99626 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CDX2Q99626 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CDX2Q99626 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
CDX2Q99626 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CDX2Q99626 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC23.58■■□□□ 1.37
CDX2Q99626 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC23.58■■□□□ 1.37
CDX2Q99626 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CDX2Q99626 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC23.58■■□□□ 1.37
CDX2Q99626 AC133552.2-202ENST00000575694 574 ntBASIC23.58■■□□□ 1.37
CDX2Q99626 MIR4758-201ENST00000577688 71 ntBASIC23.58■■□□□ 1.37
CDX2Q99626 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CDX2Q99626 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.58■■□□□ 1.37
CDX2Q99626 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CDX2Q99626 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CDX2Q99626 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CDX2Q99626 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.57■■□□□ 1.36
CDX2Q99626 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CDX2Q99626 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CDX2Q99626 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
CDX2Q99626 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC23.57■■□□□ 1.36
CDX2Q99626 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC23.57■■□□□ 1.36
CDX2Q99626 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CDX2Q99626 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC23.57■■□□□ 1.36
CDX2Q99626 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
CDX2Q99626 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC23.57■■□□□ 1.36
CDX2Q99626 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC23.57■■□□□ 1.36
CDX2Q99626 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC23.56■■□□□ 1.36
CDX2Q99626 PARP1-202ENST00000366792 553 ntTSL 3 BASIC23.56■■□□□ 1.36
CDX2Q99626 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC23.56■■□□□ 1.36
CDX2Q99626 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC23.56■■□□□ 1.36
CDX2Q99626 AC142381.4-202ENST00000563973 229 ntBASIC23.56■■□□□ 1.36
CDX2Q99626 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC23.56■■□□□ 1.36
CDX2Q99626 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC23.56■■□□□ 1.36
CDX2Q99626 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CDX2Q99626 CPT2-209ENST00000636935 803 ntTSL 5 BASIC23.56■■□□□ 1.36
CDX2Q99626 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CDX2Q99626 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CDX2Q99626 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CDX2Q99626 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
CDX2Q99626 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CDX2Q99626 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
CDX2Q99626 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CDX2Q99626 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CDX2Q99626 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.55■■□□□ 1.36
CDX2Q99626 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
CDX2Q99626 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC23.55■■□□□ 1.36
CDX2Q99626 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC23.55■■□□□ 1.36
CDX2Q99626 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
CDX2Q99626 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
CDX2Q99626 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDX2Q99626 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC23.54■■□□□ 1.36
CDX2Q99626 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.54■■□□□ 1.36
CDX2Q99626 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms