Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PTCHD1Q96NR3 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 DUSP8P5-201ENST00000422884 1815 ntBASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD1Q96NR3 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 AC142381.2-201ENST00000566120 298 ntBASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.84■□□□□ 0.93
PTCHD1Q96NR3 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.83■□□□□ 0.93
PTCHD1Q96NR3 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PTCHD1Q96NR3 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.83■□□□□ 0.92
PTCHD1Q96NR3 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 AL031432.3-201ENST00000607698 485 ntBASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD1Q96NR3 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 SUDS3P1-201ENST00000505831 966 ntBASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 AC008764.7-201ENST00000593779 1081 ntBASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD1Q96NR3 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 AC019069.1-201ENST00000610008 1333 ntBASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 AF213884.3-201ENST00000563833 479 ntBASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms