Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC25.45■■□□□ 1.67
SH3RF1Q7Z6J0 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 KRT18P5-201ENST00000436075 1291 ntBASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 AL031602.1-201ENST00000633169 911 ntBASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SH3RF1Q7Z6J0 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
SH3RF1Q7Z6J0 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
SH3RF1Q7Z6J0 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SH3RF1Q7Z6J0 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC25.44■■□□□ 1.66
SH3RF1Q7Z6J0 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
SH3RF1Q7Z6J0 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC25.44■■□□□ 1.66
SH3RF1Q7Z6J0 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC25.44■■□□□ 1.66
SH3RF1Q7Z6J0 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
SH3RF1Q7Z6J0 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SH3RF1Q7Z6J0 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SH3RF1Q7Z6J0 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.44■■□□□ 1.66
SH3RF1Q7Z6J0 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
SH3RF1Q7Z6J0 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.43■■□□□ 1.66
SH3RF1Q7Z6J0 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
SH3RF1Q7Z6J0 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
SH3RF1Q7Z6J0 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SH3RF1Q7Z6J0 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SH3RF1Q7Z6J0 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SH3RF1Q7Z6J0 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 AC009102.2-201ENST00000606772 1639 ntBASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 AK1-201ENST00000223836 736 ntTSL 3 BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SH3RF1Q7Z6J0 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SH3RF1Q7Z6J0 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SH3RF1Q7Z6J0 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SH3RF1Q7Z6J0 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC25.4■■□□□ 1.66
SH3RF1Q7Z6J0 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.4■■□□□ 1.66
SH3RF1Q7Z6J0 AC233992.3-201ENST00000607491 485 ntBASIC25.4■■□□□ 1.66
SH3RF1Q7Z6J0 AC136469.2-201ENST00000623944 1028 ntBASIC25.4■■□□□ 1.66
SH3RF1Q7Z6J0 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC25.4■■□□□ 1.66
SH3RF1Q7Z6J0 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
SH3RF1Q7Z6J0 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SH3RF1Q7Z6J0 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SH3RF1Q7Z6J0 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SH3RF1Q7Z6J0 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
SH3RF1Q7Z6J0 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
SH3RF1Q7Z6J0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SH3RF1Q7Z6J0 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
SH3RF1Q7Z6J0 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC25.39■■□□□ 1.66
SH3RF1Q7Z6J0 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
SH3RF1Q7Z6J0 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.39■■□□□ 1.65
SH3RF1Q7Z6J0 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
SH3RF1Q7Z6J0 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SH3RF1Q7Z6J0 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SH3RF1Q7Z6J0 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SH3RF1Q7Z6J0 GRAMD4P2-201ENST00000423297 1097 ntBASIC25.38■■□□□ 1.65
SH3RF1Q7Z6J0 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
SH3RF1Q7Z6J0 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SH3RF1Q7Z6J0 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC25.38■■□□□ 1.65
SH3RF1Q7Z6J0 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
SH3RF1Q7Z6J0 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC25.38■■□□□ 1.65
SH3RF1Q7Z6J0 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SH3RF1Q7Z6J0 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SH3RF1Q7Z6J0 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SH3RF1Q7Z6J0 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
SH3RF1Q7Z6J0 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC25.37■■□□□ 1.65
SH3RF1Q7Z6J0 AC006455.2-201ENST00000429931 906 ntBASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms