Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC18.23■□□□□ 0.51
PDLIM3Q53GG5 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 AC011551.1-201ENST00000614101 683 ntBASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 AC106739.1-201ENST00000617035 715 ntBASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.22■□□□□ 0.51
PDLIM3Q53GG5 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 AC021242.3-201ENST00000607598 1377 ntBASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 PBX2P1-201ENST00000493219 1291 ntBASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 AL356740.2-201ENST00000601559 647 ntBASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 MIR4466-201ENST00000606121 54 ntBASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 AC137630.3-201ENST00000607245 391 ntBASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM3Q53GG5 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
PDLIM3Q53GG5 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
PDLIM3Q53GG5 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PDLIM3Q53GG5 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
PDLIM3Q53GG5 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
PDLIM3Q53GG5 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PDLIM3Q53GG5 AC092028.1-203ENST00000608262 953 ntBASIC18.2■□□□□ 0.5
PDLIM3Q53GG5 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC18.2■□□□□ 0.5
PDLIM3Q53GG5 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PDLIM3Q53GG5 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.2■□□□□ 0.5
PDLIM3Q53GG5 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PDLIM3Q53GG5 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 CLDN5-201ENST00000403084 2357 ntBASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
PDLIM3Q53GG5 ALDH1A3-203ENST00000557963 1670 ntBASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 AC090192.1-201ENST00000517740 490 ntBASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 AC022616.5-201ENST00000518796 181 ntBASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
PDLIM3Q53GG5 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms