Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFX4Q33E94 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFX4Q33E94 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
RFX4Q33E94 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFX4Q33E94 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.55■□□□□ 0.88
RFX4Q33E94 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFX4Q33E94 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFX4Q33E94 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.55■□□□□ 0.88
RFX4Q33E94 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.55■□□□□ 0.88
RFX4Q33E94 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFX4Q33E94 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFX4Q33E94 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX4Q33E94 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RFX4Q33E94 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
RFX4Q33E94 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX4Q33E94 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RFX4Q33E94 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RFX4Q33E94 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RFX4Q33E94 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX4Q33E94 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RFX4Q33E94 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX4Q33E94 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX4Q33E94 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX4Q33E94 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.54■□□□□ 0.88
RFX4Q33E94 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RFX4Q33E94 AC139795.1-202ENST00000500444 432 ntBASIC20.54■□□□□ 0.88
RFX4Q33E94 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX4Q33E94 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.54■□□□□ 0.88
RFX4Q33E94 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFX4Q33E94 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFX4Q33E94 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.53■□□□□ 0.88
RFX4Q33E94 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
RFX4Q33E94 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.53■□□□□ 0.88
RFX4Q33E94 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.53■□□□□ 0.88
RFX4Q33E94 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFX4Q33E94 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX4Q33E94 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.53■□□□□ 0.88
RFX4Q33E94 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX4Q33E94 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX4Q33E94 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.52■□□□□ 0.88
RFX4Q33E94 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.52■□□□□ 0.88
RFX4Q33E94 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
RFX4Q33E94 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.52■□□□□ 0.88
RFX4Q33E94 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX4Q33E94 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX4Q33E94 DUX4L18-201ENST00000553347 1267 ntBASIC20.52■□□□□ 0.88
RFX4Q33E94 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.52■□□□□ 0.88
RFX4Q33E94 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX4Q33E94 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFX4Q33E94 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX4Q33E94 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX4Q33E94 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.52■□□□□ 0.88
RFX4Q33E94 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
RFX4Q33E94 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX4Q33E94 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
RFX4Q33E94 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX4Q33E94 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX4Q33E94 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RFX4Q33E94 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RFX4Q33E94 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX4Q33E94 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.51■□□□□ 0.87
RFX4Q33E94 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX4Q33E94 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX4Q33E94 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
RFX4Q33E94 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RFX4Q33E94 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX4Q33E94 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RFX4Q33E94 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
RFX4Q33E94 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX4Q33E94 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
RFX4Q33E94 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX4Q33E94 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
RFX4Q33E94 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX4Q33E94 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX4Q33E94 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
RFX4Q33E94 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX4Q33E94 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.5■□□□□ 0.87
RFX4Q33E94 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
RFX4Q33E94 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.5■□□□□ 0.87
RFX4Q33E94 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RFX4Q33E94 ABHD17AP5-201ENST00000580133 923 ntBASIC20.5■□□□□ 0.87
RFX4Q33E94 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.5■□□□□ 0.87
RFX4Q33E94 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX4Q33E94 AC080038.3-201ENST00000623346 1952 ntBASIC20.5■□□□□ 0.87
RFX4Q33E94 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.5■□□□□ 0.87
RFX4Q33E94 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFX4Q33E94 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RFX4Q33E94 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RFX4Q33E94 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFX4Q33E94 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFX4Q33E94 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFX4Q33E94 NTF6A-201ENST00000591175 560 ntBASIC20.49■□□□□ 0.87
RFX4Q33E94 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RFX4Q33E94 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.49■□□□□ 0.87
RFX4Q33E94 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFX4Q33E94 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.49■□□□□ 0.87
RFX4Q33E94 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RFX4Q33E94 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RFX4Q33E94 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.48■□□□□ 0.87
RFX4Q33E94 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms