Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PRKDCP78527 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PRKDCP78527 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.34■□□□□ 0.21
PRKDCP78527 RARRES2P4-201ENST00000514074 484 ntBASIC16.34■□□□□ 0.21
PRKDCP78527 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PRKDCP78527 AC083880.1-201ENST00000608266 535 ntBASIC16.34■□□□□ 0.21
PRKDCP78527 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PRKDCP78527 UNC93B4-201ENST00000505679 747 ntBASIC16.34■□□□□ 0.21
PRKDCP78527 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PRKDCP78527 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PRKDCP78527 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PRKDCP78527 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PRKDCP78527 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
PRKDCP78527 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC16.33■□□□□ 0.21
PRKDCP78527 AC010331.1-201ENST00000611423 582 ntBASIC16.33■□□□□ 0.21
PRKDCP78527 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
PRKDCP78527 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
PRKDCP78527 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.33■□□□□ 0.2
PRKDCP78527 AC105036.2-201ENST00000569468 176 ntBASIC16.33■□□□□ 0.2
PRKDCP78527 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
PRKDCP78527 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
PRKDCP78527 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PRKDCP78527 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.33■□□□□ 0.2
PRKDCP78527 AP006294.2-201ENST00000641667 209 ntBASIC16.33■□□□□ 0.2
PRKDCP78527 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PRKDCP78527 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKDCP78527 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKDCP78527 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PRKDCP78527 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKDCP78527 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PRKDCP78527 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKDCP78527 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC16.32■□□□□ 0.2
PRKDCP78527 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKDCP78527 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
PRKDCP78527 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PRKDCP78527 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC16.32■□□□□ 0.2
PRKDCP78527 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKDCP78527 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC16.32■□□□□ 0.2
PRKDCP78527 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKDCP78527 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKDCP78527 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PRKDCP78527 AC133041.1-202ENST00000642053 222 ntBASIC16.32■□□□□ 0.2
PRKDCP78527 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKDCP78527 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PRKDCP78527 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKDCP78527 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKDCP78527 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
PRKDCP78527 RNA5SP413-201ENST00000516373 109 ntBASIC16.32■□□□□ 0.2
PRKDCP78527 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PRKDCP78527 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC16.32■□□□□ 0.2
PRKDCP78527 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PRKDCP78527 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PRKDCP78527 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PRKDCP78527 AC141586.4-201ENST00000624558 1573 ntBASIC16.31■□□□□ 0.2
PRKDCP78527 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PRKDCP78527 BX005040.4-201ENST00000637145 1518 ntBASIC16.31■□□□□ 0.2
PRKDCP78527 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PRKDCP78527 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC16.31■□□□□ 0.2
PRKDCP78527 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
PRKDCP78527 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PRKDCP78527 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PRKDCP78527 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PRKDCP78527 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PRKDCP78527 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PRKDCP78527 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC16.31■□□□□ 0.2
PRKDCP78527 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC16.31■□□□□ 0.2
PRKDCP78527 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.31■□□□□ 0.2
PRKDCP78527 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC16.31■□□□□ 0.2
PRKDCP78527 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.31■□□□□ 0.2
PRKDCP78527 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.31■□□□□ 0.2
PRKDCP78527 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
PRKDCP78527 AL022069.1-201ENST00000568025 1636 ntBASIC16.31■□□□□ 0.2
PRKDCP78527 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PRKDCP78527 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC16.31■□□□□ 0.2
PRKDCP78527 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.3■□□□□ 0.2
PRKDCP78527 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKDCP78527 MFF-208ENST00000409616 1247 ntTSL 5 BASIC16.3■□□□□ 0.2
PRKDCP78527 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.3■□□□□ 0.2
PRKDCP78527 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.3■□□□□ 0.2
PRKDCP78527 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKDCP78527 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC16.3■□□□□ 0.2
PRKDCP78527 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.3■□□□□ 0.2
PRKDCP78527 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PRKDCP78527 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKDCP78527 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKDCP78527 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC16.3■□□□□ 0.2
PRKDCP78527 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC16.3■□□□□ 0.2
PRKDCP78527 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC16.3■□□□□ 0.2
PRKDCP78527 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKDCP78527 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PRKDCP78527 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PRKDCP78527 RARA-203ENST00000394086 2008 ntTSL 2 BASIC16.29■□□□□ 0.2
PRKDCP78527 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC16.29■□□□□ 0.2
PRKDCP78527 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PRKDCP78527 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC16.29■□□□□ 0.2
PRKDCP78527 PPP1R14BP2-201ENST00000426284 444 ntBASIC16.29■□□□□ 0.2
PRKDCP78527 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PRKDCP78527 RHOD-202ENST00000532559 538 ntTSL 3 BASIC16.29■□□□□ 0.2
PRKDCP78527 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PRKDCP78527 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms