Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC24.77■■□□□ 1.56
NKX3-2P78367 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.77■■□□□ 1.56
NKX3-2P78367 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NKX3-2P78367 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
NKX3-2P78367 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
NKX3-2P78367 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
NKX3-2P78367 AP004607.4-201ENST00000530158 1459 ntBASIC24.77■■□□□ 1.56
NKX3-2P78367 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
NKX3-2P78367 SHD-204ENST00000599689 1729 ntTSL 5 BASIC24.76■■□□□ 1.55
NKX3-2P78367 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC24.76■■□□□ 1.55
NKX3-2P78367 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.76■■□□□ 1.55
NKX3-2P78367 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC24.76■■□□□ 1.55
NKX3-2P78367 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.76■■□□□ 1.55
NKX3-2P78367 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
NKX3-2P78367 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
NKX3-2P78367 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
NKX3-2P78367 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC24.75■■□□□ 1.55
NKX3-2P78367 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC24.75■■□□□ 1.55
NKX3-2P78367 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24.75■■□□□ 1.55
NKX3-2P78367 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC24.75■■□□□ 1.55
NKX3-2P78367 AC068587.7-201ENST00000641602 218 ntBASIC24.75■■□□□ 1.55
NKX3-2P78367 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
NKX3-2P78367 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.75■■□□□ 1.55
NKX3-2P78367 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
NKX3-2P78367 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
NKX3-2P78367 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC24.74■■□□□ 1.55
NKX3-2P78367 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC24.74■■□□□ 1.55
NKX3-2P78367 HLA-L-209ENST00000420110 1011 ntBASIC24.74■■□□□ 1.55
NKX3-2P78367 CDCA4P2-201ENST00000441182 718 ntBASIC24.74■■□□□ 1.55
NKX3-2P78367 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC24.74■■□□□ 1.55
NKX3-2P78367 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC24.74■■□□□ 1.55
NKX3-2P78367 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
NKX3-2P78367 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC24.74■■□□□ 1.55
NKX3-2P78367 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
NKX3-2P78367 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
NKX3-2P78367 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
NKX3-2P78367 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
NKX3-2P78367 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
NKX3-2P78367 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
NKX3-2P78367 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.73■■□□□ 1.55
NKX3-2P78367 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC24.73■■□□□ 1.55
NKX3-2P78367 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC24.73■■□□□ 1.55
NKX3-2P78367 EED-207ENST00000528180 1745 ntTSL 5 BASIC24.72■■□□□ 1.55
NKX3-2P78367 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC24.72■■□□□ 1.55
NKX3-2P78367 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
NKX3-2P78367 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
NKX3-2P78367 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
NKX3-2P78367 AC142381.3-201ENST00000568208 1670 ntBASIC24.72■■□□□ 1.55
NKX3-2P78367 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.72■■□□□ 1.55
NKX3-2P78367 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC24.71■■□□□ 1.55
NKX3-2P78367 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
NKX3-2P78367 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.71■■□□□ 1.55
NKX3-2P78367 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.71■■□□□ 1.55
NKX3-2P78367 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
NKX3-2P78367 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
NKX3-2P78367 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC24.71■■□□□ 1.55
NKX3-2P78367 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.71■■□□□ 1.55
NKX3-2P78367 AC073111.5-205ENST00000641717 521 ntBASIC24.71■■□□□ 1.55
NKX3-2P78367 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
NKX3-2P78367 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC24.71■■□□□ 1.55
NKX3-2P78367 BX005040.4-201ENST00000637145 1518 ntBASIC24.71■■□□□ 1.55
NKX3-2P78367 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
NKX3-2P78367 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.7■■□□□ 1.55
NKX3-2P78367 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NKX3-2P78367 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NKX3-2P78367 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.7■■□□□ 1.54
NKX3-2P78367 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC24.7■■□□□ 1.54
NKX3-2P78367 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NKX3-2P78367 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
NKX3-2P78367 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX3-2P78367 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX3-2P78367 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
NKX3-2P78367 AC137761.2-201ENST00000561729 223 ntBASIC24.69■■□□□ 1.54
NKX3-2P78367 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC24.69■■□□□ 1.54
NKX3-2P78367 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC24.69■■□□□ 1.54
NKX3-2P78367 AC145350.3-201ENST00000569033 163 ntBASIC24.69■■□□□ 1.54
NKX3-2P78367 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
NKX3-2P78367 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX3-2P78367 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX3-2P78367 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX3-2P78367 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
NKX3-2P78367 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX3-2P78367 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
NKX3-2P78367 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
NKX3-2P78367 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
NKX3-2P78367 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
NKX3-2P78367 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.68■■□□□ 1.54
NKX3-2P78367 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC24.68■■□□□ 1.54
NKX3-2P78367 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
NKX3-2P78367 AC004854.2-201ENST00000608450 1441 ntBASIC24.68■■□□□ 1.54
NKX3-2P78367 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
NKX3-2P78367 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
NKX3-2P78367 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NKX3-2P78367 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
NKX3-2P78367 AC138932.3-201ENST00000567634 1902 ntBASIC24.67■■□□□ 1.54
NKX3-2P78367 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
NKX3-2P78367 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NKX3-2P78367 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NKX3-2P78367 COX20-201ENST00000366528 568 ntTSL 2 BASIC24.67■■□□□ 1.54
NKX3-2P78367 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC24.67■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms