Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS1BP61024 AIRN-201ENST00000601203 4374 ntBASIC15.34■□□□□ 0.05
CKS1BP61024 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
CKS1BP61024 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC15.33■□□□□ 0.05
CKS1BP61024 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CKS1BP61024 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CKS1BP61024 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CKS1BP61024 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS1BP61024 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CKS1BP61024 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CKS1BP61024 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS1BP61024 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
CKS1BP61024 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS1BP61024 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CKS1BP61024 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CKS1BP61024 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS1BP61024 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
CKS1BP61024 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
CKS1BP61024 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 WWC2-AS2-201ENST00000578387 2183 ntBASIC15.32■□□□□ 0.04
CKS1BP61024 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CKS1BP61024 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC15.32■□□□□ 0.04
CKS1BP61024 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 HES4-204ENST00000484667 667 ntTSL 3 BASIC15.32■□□□□ 0.04
CKS1BP61024 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS1BP61024 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CKS1BP61024 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS1BP61024 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
CKS1BP61024 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS1BP61024 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CKS1BP61024 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CKS1BP61024 RAP2CP1-202ENST00000605179 643 ntBASIC15.31■□□□□ 0.04
CKS1BP61024 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CKS1BP61024 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CKS1BP61024 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
CKS1BP61024 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS1BP61024 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.31■□□□□ 0.04
CKS1BP61024 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS1BP61024 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CKS1BP61024 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS1BP61024 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC15.31■□□□□ 0.04
CKS1BP61024 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CKS1BP61024 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS1BP61024 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CKS1BP61024 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CKS1BP61024 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS1BP61024 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS1BP61024 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS1BP61024 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CKS1BP61024 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS1BP61024 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS1BP61024 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS1BP61024 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS1BP61024 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CKS1BP61024 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
CKS1BP61024 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CKS1BP61024 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC15.3■□□□□ 0.04
CKS1BP61024 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC15.3■□□□□ 0.04
CKS1BP61024 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CKS1BP61024 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CKS1BP61024 SRP68-213ENST00000629930 165 ntTSL 5 BASIC15.3■□□□□ 0.04
CKS1BP61024 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS1BP61024 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CKS1BP61024 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC15.29■□□□□ 0.04
CKS1BP61024 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC15.29■□□□□ 0.04
CKS1BP61024 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC15.29■□□□□ 0.04
CKS1BP61024 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CKS1BP61024 PVT1-219ENST00000523427 938 ntTSL 3 BASIC15.29■□□□□ 0.04
CKS1BP61024 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC15.29■□□□□ 0.04
CKS1BP61024 AC026202.3-201ENST00000600805 1127 ntBASIC15.29■□□□□ 0.04
CKS1BP61024 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC15.29■□□□□ 0.04
CKS1BP61024 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CKS1BP61024 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CKS1BP61024 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms