Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.19■□□□□ 0.98
VSX2P58304 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.19■□□□□ 0.98
VSX2P58304 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.19■□□□□ 0.98
VSX2P58304 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.19■□□□□ 0.98
VSX2P58304 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.18■□□□□ 0.98
VSX2P58304 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VSX2P58304 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
VSX2P58304 MIR939-201ENST00000401314 82 ntBASIC21.18■□□□□ 0.98
VSX2P58304 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
VSX2P58304 AL136967.2-201ENST00000623968 743 ntBASIC21.18■□□□□ 0.98
VSX2P58304 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VSX2P58304 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.18■□□□□ 0.98
VSX2P58304 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.18■□□□□ 0.98
VSX2P58304 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VSX2P58304 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VSX2P58304 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.18■□□□□ 0.98
VSX2P58304 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
VSX2P58304 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.17■□□□□ 0.98
VSX2P58304 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VSX2P58304 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.17■□□□□ 0.98
VSX2P58304 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
VSX2P58304 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.17■□□□□ 0.98
VSX2P58304 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VSX2P58304 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.17■□□□□ 0.98
VSX2P58304 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VSX2P58304 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VSX2P58304 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VSX2P58304 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VSX2P58304 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VSX2P58304 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.16■□□□□ 0.98
VSX2P58304 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
VSX2P58304 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VSX2P58304 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.16■□□□□ 0.98
VSX2P58304 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.16■□□□□ 0.98
VSX2P58304 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VSX2P58304 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VSX2P58304 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 AC004687.1-201ENST00000579003 1625 ntBASIC21.15■□□□□ 0.98
VSX2P58304 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.15■□□□□ 0.98
VSX2P58304 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.15■□□□□ 0.98
VSX2P58304 AC099791.1-201ENST00000416440 715 ntBASIC21.15■□□□□ 0.98
VSX2P58304 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 AC027682.1-201ENST00000562846 899 ntBASIC21.15■□□□□ 0.98
VSX2P58304 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.15■□□□□ 0.98
VSX2P58304 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
VSX2P58304 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX2P58304 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
VSX2P58304 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
VSX2P58304 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.14■□□□□ 0.97
VSX2P58304 BX842568.3-201ENST00000418104 571 ntBASIC21.14■□□□□ 0.97
VSX2P58304 SLC47A1P1-202ENST00000449666 945 ntBASIC21.14■□□□□ 0.97
VSX2P58304 AC091305.1-201ENST00000479476 895 ntBASIC21.14■□□□□ 0.97
VSX2P58304 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
VSX2P58304 AC233992.3-201ENST00000607491 485 ntBASIC21.14■□□□□ 0.97
VSX2P58304 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
VSX2P58304 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VSX2P58304 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VSX2P58304 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VSX2P58304 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.13■□□□□ 0.97
VSX2P58304 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VSX2P58304 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VSX2P58304 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
VSX2P58304 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
VSX2P58304 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.13■□□□□ 0.97
VSX2P58304 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VSX2P58304 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VSX2P58304 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
VSX2P58304 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VSX2P58304 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VSX2P58304 RASA4CP-201ENST00000424092 1398 ntBASIC21.12■□□□□ 0.97
VSX2P58304 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.12■□□□□ 0.97
VSX2P58304 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.12■□□□□ 0.97
VSX2P58304 AC010525.1-201ENST00000585559 441 ntBASIC21.12■□□□□ 0.97
VSX2P58304 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.12■□□□□ 0.97
VSX2P58304 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VSX2P58304 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.12■□□□□ 0.97
VSX2P58304 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VSX2P58304 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VSX2P58304 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VSX2P58304 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
VSX2P58304 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms