Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.38■■□□□ 1.01
CLDN6P56747 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.38■■□□□ 1.01
CLDN6P56747 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLDN6P56747 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLDN6P56747 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLDN6P56747 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.38■■□□□ 1.01
CLDN6P56747 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLDN6P56747 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLDN6P56747 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLDN6P56747 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLDN6P56747 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.37■■□□□ 1.01
CLDN6P56747 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLDN6P56747 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLDN6P56747 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLDN6P56747 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.37■■□□□ 1.01
CLDN6P56747 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.37■■□□□ 1.01
CLDN6P56747 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLDN6P56747 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLDN6P56747 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.37■■□□□ 1.01
CLDN6P56747 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.37■■□□□ 1.01
CLDN6P56747 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.37■■□□□ 1.01
CLDN6P56747 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.37■■□□□ 1.01
CLDN6P56747 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLDN6P56747 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLDN6P56747 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.37■■□□□ 1.01
CLDN6P56747 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.36■■□□□ 1.01
CLDN6P56747 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLDN6P56747 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
CLDN6P56747 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLDN6P56747 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CLDN6P56747 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.36■■□□□ 1.01
CLDN6P56747 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.36■■□□□ 1.01
CLDN6P56747 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.36■■□□□ 1.01
CLDN6P56747 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLDN6P56747 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLDN6P56747 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CLDN6P56747 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.35■■□□□ 1.01
CLDN6P56747 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLDN6P56747 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLDN6P56747 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CLDN6P56747 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.35■■□□□ 1.01
CLDN6P56747 AC104771.1-201ENST00000603335 964 ntBASIC21.35■■□□□ 1.01
CLDN6P56747 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CLDN6P56747 AC004854.2-201ENST00000608450 1441 ntBASIC21.35■■□□□ 1.01
CLDN6P56747 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN6P56747 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN6P56747 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN6P56747 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN6P56747 ABHD17AP1-201ENST00000358206 933 ntBASIC21.34■■□□□ 1.01
CLDN6P56747 AL355802.2-201ENST00000402069 882 ntBASIC21.34■■□□□ 1.01
CLDN6P56747 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.34■■□□□ 1.01
CLDN6P56747 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.34■■□□□ 1.01
CLDN6P56747 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.34■■□□□ 1.01
CLDN6P56747 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN6P56747 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.34■■□□□ 1.01
CLDN6P56747 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLDN6P56747 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
CLDN6P56747 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CLDN6P56747 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.33■■□□□ 1.01
CLDN6P56747 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.33■■□□□ 1.01
CLDN6P56747 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CLDN6P56747 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CLDN6P56747 AC020928.2-201ENST00000588717 2197 ntBASIC21.33■■□□□ 1
CLDN6P56747 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1
CLDN6P56747 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CLDN6P56747 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.32■■□□□ 1
CLDN6P56747 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CLDN6P56747 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.32■■□□□ 1
CLDN6P56747 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.32■■□□□ 1
CLDN6P56747 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLDN6P56747 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.32■■□□□ 1
CLDN6P56747 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.32■■□□□ 1
CLDN6P56747 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLDN6P56747 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.31■■□□□ 1
CLDN6P56747 ESRRAP2-201ENST00000418437 1549 ntBASIC21.31■■□□□ 1
CLDN6P56747 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN6P56747 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN6P56747 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN6P56747 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLDN6P56747 DUX4L4-201ENST00000566884 1269 ntBASIC21.31■■□□□ 1
CLDN6P56747 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.31■■□□□ 1
CLDN6P56747 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN6P56747 AP004607.4-201ENST00000530158 1459 ntBASIC21.31■■□□□ 1
CLDN6P56747 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN6P56747 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN6P56747 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN6P56747 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CLDN6P56747 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLDN6P56747 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.3■■□□□ 1
CLDN6P56747 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLDN6P56747 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLDN6P56747 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.3■■□□□ 1
CLDN6P56747 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CLDN6P56747 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLDN6P56747 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLDN6P56747 CROCCP5-201ENST00000436658 830 ntBASIC21.3■■□□□ 1
CLDN6P56747 AC026185.1-201ENST00000445748 174 ntBASIC21.3■■□□□ 1
CLDN6P56747 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.3■■□□□ 1
CLDN6P56747 TPRG1LP1-201ENST00000598702 760 ntBASIC21.3■■□□□ 1
CLDN6P56747 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms