Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.12■□□□□ 0.97
MSX2P35548 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
MSX2P35548 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSX2P35548 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.12■□□□□ 0.97
MSX2P35548 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSX2P35548 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.12■□□□□ 0.97
MSX2P35548 AC087742.1-201ENST00000575880 1738 ntBASIC21.12■□□□□ 0.97
MSX2P35548 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSX2P35548 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
MSX2P35548 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.12■□□□□ 0.97
MSX2P35548 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.12■□□□□ 0.97
MSX2P35548 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX2P35548 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MSX2P35548 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX2P35548 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.11■□□□□ 0.97
MSX2P35548 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
MSX2P35548 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.11■□□□□ 0.97
MSX2P35548 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX2P35548 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX2P35548 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX2P35548 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX2P35548 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX2P35548 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
MSX2P35548 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX2P35548 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
MSX2P35548 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSX2P35548 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
MSX2P35548 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.1■□□□□ 0.97
MSX2P35548 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
MSX2P35548 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSX2P35548 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSX2P35548 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSX2P35548 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSX2P35548 AL592293.1-201ENST00000502889 1188 ntBASIC21.1■□□□□ 0.97
MSX2P35548 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSX2P35548 AC005229.4-201ENST00000610085 2198 ntBASIC21.1■□□□□ 0.97
MSX2P35548 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.09■□□□□ 0.97
MSX2P35548 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSX2P35548 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSX2P35548 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSX2P35548 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
MSX2P35548 FAM99A-202ENST00000538190 1989 ntBASIC21.09■□□□□ 0.97
MSX2P35548 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSX2P35548 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.09■□□□□ 0.97
MSX2P35548 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSX2P35548 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSX2P35548 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.08■□□□□ 0.97
MSX2P35548 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSX2P35548 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSX2P35548 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
MSX2P35548 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
MSX2P35548 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.08■□□□□ 0.96
MSX2P35548 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.07■□□□□ 0.96
MSX2P35548 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.07■□□□□ 0.96
MSX2P35548 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSX2P35548 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSX2P35548 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSX2P35548 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSX2P35548 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSX2P35548 AC073130.3-201ENST00000624389 2278 ntBASIC21.07■□□□□ 0.96
MSX2P35548 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.07■□□□□ 0.96
MSX2P35548 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSX2P35548 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSX2P35548 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSX2P35548 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
MSX2P35548 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.06■□□□□ 0.96
MSX2P35548 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSX2P35548 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSX2P35548 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.06■□□□□ 0.96
MSX2P35548 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSX2P35548 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSX2P35548 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MSX2P35548 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
MSX2P35548 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MSX2P35548 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSX2P35548 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSX2P35548 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSX2P35548 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSX2P35548 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MSX2P35548 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.05■□□□□ 0.96
MSX2P35548 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.05■□□□□ 0.96
MSX2P35548 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
MSX2P35548 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSX2P35548 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.04■□□□□ 0.96
MSX2P35548 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSX2P35548 AC010542.4-201ENST00000563151 1910 ntBASIC21.04■□□□□ 0.96
MSX2P35548 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.04■□□□□ 0.96
MSX2P35548 LONRF2P2-201ENST00000439212 571 ntBASIC21.04■□□□□ 0.96
MSX2P35548 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.04■□□□□ 0.96
MSX2P35548 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.04■□□□□ 0.96
MSX2P35548 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSX2P35548 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSX2P35548 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
MSX2P35548 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
MSX2P35548 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
MSX2P35548 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.03■□□□□ 0.96
MSX2P35548 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.03■□□□□ 0.96
MSX2P35548 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSX2P35548 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
MSX2P35548 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms