Protein–RNA interactions for Protein: P09630

HOXC6, Homeobox protein Hox-C6, humanhuman

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6P09630 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
HOXC6P09630 EI24-213ENST00000618552 1747 ntTSL 5 BASIC25.29■■□□□ 1.64
HOXC6P09630 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
HOXC6P09630 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC25.29■■□□□ 1.64
HOXC6P09630 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC25.29■■□□□ 1.64
HOXC6P09630 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC25.29■■□□□ 1.64
HOXC6P09630 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC25.29■■□□□ 1.64
HOXC6P09630 TPRG1LP1-201ENST00000598702 760 ntBASIC25.29■■□□□ 1.64
HOXC6P09630 AC080038.1-201ENST00000611274 1154 ntBASIC25.29■■□□□ 1.64
HOXC6P09630 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
HOXC6P09630 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC25.29■■□□□ 1.64
HOXC6P09630 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25.29■■□□□ 1.64
HOXC6P09630 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
HOXC6P09630 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
HOXC6P09630 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
HOXC6P09630 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
HOXC6P09630 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC25.28■■□□□ 1.64
HOXC6P09630 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC25.28■■□□□ 1.64
HOXC6P09630 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC25.28■■□□□ 1.64
HOXC6P09630 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC25.28■■□□□ 1.64
HOXC6P09630 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC25.28■■□□□ 1.64
HOXC6P09630 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC25.27■■□□□ 1.64
HOXC6P09630 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HOXC6P09630 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC25.27■■□□□ 1.64
HOXC6P09630 AC135731.1-201ENST00000569415 2548 ntBASIC25.27■■□□□ 1.64
HOXC6P09630 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HOXC6P09630 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC25.27■■□□□ 1.64
HOXC6P09630 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HOXC6P09630 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC25.26■■□□□ 1.63
HOXC6P09630 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC25.26■■□□□ 1.63
HOXC6P09630 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC25.26■■□□□ 1.63
HOXC6P09630 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC25.26■■□□□ 1.63
HOXC6P09630 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC25.26■■□□□ 1.63
HOXC6P09630 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
HOXC6P09630 TK2-208ENST00000545043 1120 ntTSL 2 BASIC25.25■■□□□ 1.63
HOXC6P09630 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC25.25■■□□□ 1.63
HOXC6P09630 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
HOXC6P09630 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.25■■□□□ 1.63
HOXC6P09630 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
HOXC6P09630 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC25.25■■□□□ 1.63
HOXC6P09630 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HOXC6P09630 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC25.24■■□□□ 1.63
HOXC6P09630 MED17-227ENST00000640521 2047 ntTSL 5 BASIC25.24■■□□□ 1.63
HOXC6P09630 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HOXC6P09630 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HOXC6P09630 AC142381.3-201ENST00000568208 1670 ntBASIC25.24■■□□□ 1.63
HOXC6P09630 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
HOXC6P09630 GAS2L1P2-201ENST00000436355 1356 ntBASIC25.24■■□□□ 1.63
HOXC6P09630 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC25.24■■□□□ 1.63
HOXC6P09630 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
HOXC6P09630 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC25.24■■□□□ 1.63
HOXC6P09630 GALNS-213ENST00000569433 723 ntTSL 3 BASIC25.24■■□□□ 1.63
HOXC6P09630 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC25.23■■□□□ 1.63
HOXC6P09630 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
HOXC6P09630 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
HOXC6P09630 CDCA4P2-201ENST00000441182 718 ntBASIC25.23■■□□□ 1.63
HOXC6P09630 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
HOXC6P09630 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC25.23■■□□□ 1.63
HOXC6P09630 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC25.23■■□□□ 1.63
HOXC6P09630 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC25.23■■□□□ 1.63
HOXC6P09630 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC25.23■■□□□ 1.63
HOXC6P09630 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC25.23■■□□□ 1.63
HOXC6P09630 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
HOXC6P09630 AC138932.3-201ENST00000567634 1902 ntBASIC25.23■■□□□ 1.63
HOXC6P09630 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
HOXC6P09630 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
HOXC6P09630 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
HOXC6P09630 RARA-203ENST00000394086 2008 ntTSL 2 BASIC25.22■■□□□ 1.63
HOXC6P09630 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
HOXC6P09630 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
HOXC6P09630 SHD-204ENST00000599689 1729 ntTSL 5 BASIC25.21■■□□□ 1.63
HOXC6P09630 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HOXC6P09630 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
HOXC6P09630 HSCB-202ENST00000398941 955 ntTSL 2 BASIC25.21■■□□□ 1.63
HOXC6P09630 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC25.21■■□□□ 1.63
HOXC6P09630 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC25.21■■□□□ 1.63
HOXC6P09630 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
HOXC6P09630 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
HOXC6P09630 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
HOXC6P09630 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC25.2■■□□□ 1.62
HOXC6P09630 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
HOXC6P09630 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
HOXC6P09630 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
HOXC6P09630 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.62
HOXC6P09630 AC073111.5-205ENST00000641717 521 ntBASIC25.2■■□□□ 1.62
HOXC6P09630 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
HOXC6P09630 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms