Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC245100.8-202ENST00000629247 1058 ntBASIC21.16■□□□□ 0.98
SEMA3DO95025 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SEMA3DO95025 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SEMA3DO95025 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.16■□□□□ 0.98
SEMA3DO95025 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SEMA3DO95025 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SEMA3DO95025 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SEMA3DO95025 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SEMA3DO95025 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SEMA3DO95025 ESRRAP2-201ENST00000418437 1549 ntBASIC21.15■□□□□ 0.98
SEMA3DO95025 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SEMA3DO95025 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SEMA3DO95025 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SEMA3DO95025 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.15■□□□□ 0.98
SEMA3DO95025 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SEMA3DO95025 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SEMA3DO95025 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.15■□□□□ 0.98
SEMA3DO95025 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SEMA3DO95025 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
SEMA3DO95025 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SEMA3DO95025 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SEMA3DO95025 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SEMA3DO95025 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
SEMA3DO95025 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SEMA3DO95025 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SEMA3DO95025 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SEMA3DO95025 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SEMA3DO95025 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.14■□□□□ 0.97
SEMA3DO95025 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SEMA3DO95025 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SEMA3DO95025 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SEMA3DO95025 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SEMA3DO95025 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SEMA3DO95025 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SEMA3DO95025 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SEMA3DO95025 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SEMA3DO95025 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.13■□□□□ 0.97
SEMA3DO95025 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SEMA3DO95025 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
SEMA3DO95025 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SEMA3DO95025 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SEMA3DO95025 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
SEMA3DO95025 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SEMA3DO95025 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.12■□□□□ 0.97
SEMA3DO95025 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SEMA3DO95025 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SEMA3DO95025 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.12■□□□□ 0.97
SEMA3DO95025 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SEMA3DO95025 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.12■□□□□ 0.97
SEMA3DO95025 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SEMA3DO95025 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SEMA3DO95025 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SEMA3DO95025 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SEMA3DO95025 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SEMA3DO95025 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SEMA3DO95025 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
SEMA3DO95025 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.11■□□□□ 0.97
SEMA3DO95025 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SEMA3DO95025 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SEMA3DO95025 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SEMA3DO95025 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.11■□□□□ 0.97
SEMA3DO95025 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
SEMA3DO95025 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
SEMA3DO95025 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.11■□□□□ 0.97
SEMA3DO95025 AL499627.2-201ENST00000606283 725 ntBASIC21.11■□□□□ 0.97
SEMA3DO95025 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SEMA3DO95025 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SEMA3DO95025 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SEMA3DO95025 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SEMA3DO95025 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
SEMA3DO95025 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.11■□□□□ 0.97
SEMA3DO95025 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SEMA3DO95025 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.1■□□□□ 0.97
SEMA3DO95025 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SEMA3DO95025 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SEMA3DO95025 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
SEMA3DO95025 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SEMA3DO95025 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SEMA3DO95025 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.1■□□□□ 0.97
SEMA3DO95025 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.1■□□□□ 0.97
SEMA3DO95025 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SEMA3DO95025 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.1■□□□□ 0.97
SEMA3DO95025 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SEMA3DO95025 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SEMA3DO95025 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SEMA3DO95025 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.1■□□□□ 0.97
SEMA3DO95025 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.1■□□□□ 0.97
SEMA3DO95025 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.1■□□□□ 0.97
SEMA3DO95025 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.1■□□□□ 0.97
SEMA3DO95025 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SEMA3DO95025 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SEMA3DO95025 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.1■□□□□ 0.97
SEMA3DO95025 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SEMA3DO95025 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.09■□□□□ 0.97
SEMA3DO95025 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SEMA3DO95025 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.09■□□□□ 0.97
SEMA3DO95025 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SEMA3DO95025 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SEMA3DO95025 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
SEMA3DO95025 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms