Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MIR6724-3-201ENST00000622482 92 ntBASIC21.66■■□□□ 1.06
VPS4BO75351 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4BO75351 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4BO75351 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS4BO75351 AF131216.4-201ENST00000638924 1588 ntBASIC21.65■■□□□ 1.06
VPS4BO75351 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS4BO75351 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.65■■□□□ 1.06
VPS4BO75351 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS4BO75351 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.65■■□□□ 1.06
VPS4BO75351 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS4BO75351 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
VPS4BO75351 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS4BO75351 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VPS4BO75351 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VPS4BO75351 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS4BO75351 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.64■■□□□ 1.06
VPS4BO75351 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
VPS4BO75351 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS4BO75351 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.64■■□□□ 1.05
VPS4BO75351 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS4BO75351 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS4BO75351 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS4BO75351 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS4BO75351 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS4BO75351 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS4BO75351 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS4BO75351 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
VPS4BO75351 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS4BO75351 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.64■■□□□ 1.05
VPS4BO75351 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
VPS4BO75351 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
VPS4BO75351 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
VPS4BO75351 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.63■■□□□ 1.05
VPS4BO75351 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
VPS4BO75351 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
VPS4BO75351 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS4BO75351 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.63■■□□□ 1.05
VPS4BO75351 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS4BO75351 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS4BO75351 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
VPS4BO75351 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS4BO75351 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS4BO75351 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS4BO75351 MIR4281-201ENST00000580852 62 ntBASIC21.62■■□□□ 1.05
VPS4BO75351 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
VPS4BO75351 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.61■■□□□ 1.05
VPS4BO75351 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS4BO75351 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS4BO75351 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS4BO75351 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS4BO75351 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.61■■□□□ 1.05
VPS4BO75351 AC137767.1-201ENST00000602918 1920 ntBASIC21.61■■□□□ 1.05
VPS4BO75351 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.61■■□□□ 1.05
VPS4BO75351 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS4BO75351 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.61■■□□□ 1.05
VPS4BO75351 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS4BO75351 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS4BO75351 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS4BO75351 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS4BO75351 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS4BO75351 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS4BO75351 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.6■■□□□ 1.05
VPS4BO75351 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS4BO75351 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS4BO75351 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS4BO75351 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS4BO75351 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS4BO75351 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.6■■□□□ 1.05
VPS4BO75351 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.6■■□□□ 1.05
VPS4BO75351 RARRES2P6-201ENST00000567333 442 ntBASIC21.6■■□□□ 1.05
VPS4BO75351 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.6■■□□□ 1.05
VPS4BO75351 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS4BO75351 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS4BO75351 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS4BO75351 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS4BO75351 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS4BO75351 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.6■■□□□ 1.05
VPS4BO75351 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS4BO75351 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
VPS4BO75351 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS4BO75351 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS4BO75351 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS4BO75351 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS4BO75351 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VPS4BO75351 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS4BO75351 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS4BO75351 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
VPS4BO75351 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS4BO75351 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS4BO75351 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS4BO75351 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS4BO75351 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.58■■□□□ 1.05
VPS4BO75351 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS4BO75351 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS4BO75351 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS4BO75351 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.58■■□□□ 1.05
VPS4BO75351 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS4BO75351 AL353803.4-201ENST00000565882 1934 ntBASIC21.58■■□□□ 1.04
VPS4BO75351 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.58■■□□□ 1.04
VPS4BO75351 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms